Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029732.1-P | Field mustard | plastid | 96.17 | 95.83 |
| CDY44667 | Canola | plastid | 96.17 | 95.83 |
| CDY53084 | Canola | plastid | 95.47 | 94.81 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 46.34 | 91.1 |
| HORVU2Hr1G041270.2 | Barley | endoplasmic reticulum, plastid | 37.28 | 89.17 |
| AT5G01530.1 | Thale cress | plastid | 88.85 | 87.93 |
| Solyc09g014520.2.1 | Tomato | plastid | 84.67 | 85.26 |
| PGSC0003DMT400021871 | Potato | plastid | 84.32 | 84.91 |
| KRH75874 | Soybean | mitochondrion, nucleus, plastid | 85.37 | 84.48 |
| KRH65776 | Soybean | nucleus, plastid | 85.02 | 84.14 |
| EER99537 | Sorghum | plastid | 82.58 | 82.29 |
| TraesCS2B01G233400.1 | Wheat | plastid | 81.53 | 81.82 |
| Os07t0558400-01 | Rice | plasma membrane, plastid | 82.58 | 81.72 |
| TraesCS2D01G209900.1 | Wheat | plastid | 80.84 | 81.12 |
| TraesCS2A01G206200.1 | Wheat | plastid | 80.84 | 81.12 |
| Zm00001d006587_P001 | Maize | plastid | 82.23 | 81.1 |
| Zm00001d021763_P001 | Maize | plastid | 81.53 | 80.41 |
| VIT_08s0007g02190.t01 | Wine grape | plastid | 82.58 | 69.3 |
| AT2G40100.1 | Thale cress | plastid | 65.85 | 68.48 |
| HORVU5Hr1G013200.1 | Barley | plastid | 67.25 | 68.2 |
| AT3G54890.1 | Thale cress | plastid | 34.49 | 41.08 |
| AT2G34430.1 | Thale cress | plastid | 34.15 | 36.84 |
| AT1G29930.1 | Thale cress | plastid | 33.45 | 35.96 |
| AT1G29920.1 | Thale cress | plastid | 33.45 | 35.96 |
| AT1G29910.1 | Thale cress | plastid | 33.45 | 35.96 |
| AT2G34420.1 | Thale cress | plastid | 33.1 | 35.85 |
| AT3G47470.1 | Thale cress | plastid | 31.01 | 35.46 |
| AT3G61470.1 | Thale cress | plastid | 30.31 | 33.85 |
| AT5G54270.1 | Thale cress | plastid | 31.01 | 33.58 |
| AT2G05070.1 | Thale cress | plastid | 30.31 | 32.83 |
| AT1G45474.2 | Thale cress | mitochondrion | 29.27 | 32.81 |
| AT1G15820.1 | Thale cress | plastid | 28.92 | 32.17 |
| AT1G19150.1 | Thale cress | plastid | 29.97 | 31.85 |
| AT4G10340.1 | Thale cress | plastid | 30.66 | 31.43 |
| AT1G61520.1 | Thale cress | plastid | 29.27 | 30.77 |
| AT3G27690.2 | Thale cress | golgi, plastid | 29.97 | 28.86 |
| AT1G76570.1 | Thale cress | plastid | 32.75 | 28.75 |
| AT5G28450.1 | Thale cress | plastid | 16.72 | 27.75 |
| AT2G05100.2 | Thale cress | plastid | 27.87 | 25.24 |
Protein Annotations
| MapMan:1.1.1.1.2 | Gene3D:1.10.3460.10 | EntrezGene:820043 | ProteinID:AAF07831.1 | ProteinID:AEE74697.1 | ProteinID:AEE74698.1 |
| EMBL:AF134127 | ArrayExpress:AT3G08940 | EnsemblPlantsGene:AT3G08940 | RefSeq:AT3G08940 | TAIR:AT3G08940 | RefSeq:AT3G08940-TAIR-G |
| EnsemblPlants:AT3G08940.2 | TAIR:AT3G08940.2 | EMBL:AY065140 | EMBL:AY081608 | Unigene:At.21828 | InterPro:Chloro_AB-bd_pln |
| InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006091 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009507 | GO:GO:0009522 | GO:GO:0009523 | GO:GO:0009534 | GO:GO:0009535 | GO:GO:0009536 |
| GO:GO:0009579 | GO:GO:0009628 | GO:GO:0009637 | GO:GO:0009719 | GO:GO:0009735 | GO:GO:0009765 |
| GO:GO:0009768 | GO:GO:0009941 | GO:GO:0009987 | GO:GO:0010114 | GO:GO:0010218 | GO:GO:0010287 |
| GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016168 | GO:GO:0018298 | GO:GO:0019538 |
| GO:GO:0031409 | GO:GO:0046872 | InterPro:IPR023329 | Symbol:LHCB4.2 | RefSeq:NP_187506.1 | RefSeq:NP_850545.1 |
| PFAM:PF00504 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000039 | PO:PO:0000223 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0005645 | PO:PO:0006339 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009001 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR21649 | PANTHER:PTHR21649:SF6 | UniProt:Q9XF88 | SUPFAM:SSF103511 | UniParc:UPI00000A872B | SEG:seg |
Description
LHCB4.2Chlorophyll a-b binding protein CP29.2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XF88]
Coordinates
chr3:+:2717557..2718923
Molecular Weight (calculated)
31195.1 Da
IEP (calculated)
6.139
GRAVY (calculated)
-0.064
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MAATSTAAAA SSIMGTRVVS DISSNSSRFT ARFGFGTKKA SPKKAKTVIS DRPLWFPGAK SPEYLDGSLV GDYGFDPFGL GKPAEYLQFD LDSLDQNLAK
101: NLYGEVIGTR TEAVDPKSTP FQPYSEVFGL QRFRECELIH GRWAMLATLG AITVEWLTGV TWQDAGKVEL VDGSSYLGQP LPFSISTLIW IEVLVIGYIE
201: FQRNAELDSE KRLYPGGKFF DPLGLASDPV KKAQLQLAEI KHARLAMVGF LGFAVQAAAT GKGPLNNWAT HLSDPLHTTI IDTFSSS
101: NLYGEVIGTR TEAVDPKSTP FQPYSEVFGL QRFRECELIH GRWAMLATLG AITVEWLTGV TWQDAGKVEL VDGSSYLGQP LPFSISTLIW IEVLVIGYIE
201: FQRNAELDSE KRLYPGGKFF DPLGLASDPV KKAQLQLAEI KHARLAMVGF LGFAVQAAAT GKGPLNNWAT HLSDPLHTTI IDTFSSS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.