CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97750	Soybean	plastid	95.39	96.76
AT2G40100.1	Thale cress	plastid	74.82	76.45
Bra004989.1-P	Field mustard	plastid	73.05	74.64
CDX74808	Canola	plastid	73.05	74.64
CDY20518	Canola	plastid	72.69	74.28
KRH75874	Soybean	mitochondrion, nucleus, plastid	70.57	68.62
KRH65776	Soybean	nucleus, plastid	70.57	68.62
CDY61708	Canola	plastid	54.96	44.29
KRH08634	Soybean	endoplasmic reticulum	15.25	34.68
KRH08384	Soybean	nucleus, plastid	29.08	33.33
KRH70044	Soybean	mitochondrion, nucleus, plastid	29.08	33.33
KRH43915	Soybean	mitochondrion, nucleus, plastid	29.43	31.8
KRH58296	Soybean	plastid	27.3	31.69
KRH10515	Soybean	mitochondrion, nucleus, plastid	29.08	31.54
KRH06319	Soybean	nucleus, plastid	30.14	31.48
KRH08676	Soybean	nucleus, plastid	29.08	31.06
KRH08669	Soybean	nucleus, plastid	29.08	31.06
KRH08672	Soybean	mitochondrion, nucleus, plastid	29.08	31.06
KRH63318	Soybean	plastid	27.66	30.95
KRH54568	Soybean	nucleus, plastid	27.66	30.95
KRH58441	Soybean	mitochondrion, plastid	28.72	30.8
KRH42185	Soybean	mitochondrion, nucleus, plastid	28.01	30.62
KRH42317	Soybean	mitochondrion, nucleus, plastid	28.37	30.42
KRH12566	Soybean	plastid	28.01	30.38
KRH37524	Soybean	plastid	28.01	30.38
KRH70280	Soybean	plastid	26.6	30.12
KRH74003	Soybean	nucleus, plastid	27.66	29.43
KRH14122	Soybean	nucleus, plastid	27.66	29.43
KRH22164	Soybean	nucleus, plastid	27.66	29.21
KRH27171	Soybean	mitochondrion, nucleus, plastid	27.66	29.1
KRH47742	Soybean	nucleus	28.01	28.01
KRH09238	Soybean	mitochondrion, nucleus, plastid	28.37	27.68
KRH38736	Soybean	nucleus, plastid	28.37	27.49
KRH34336	Soybean	plastid	27.66	27.18
KRH14048	Soybean	nucleus, plastid	26.6	27.17
KRH74072	Soybean	mitochondrion, nucleus, plastid	26.6	27.17
KRG92462	Soybean	nucleus, plastid	27.3	26.74
KRH68993	Soybean	plastid	28.72	26.3
KRH51989	Soybean	nucleus	25.53	25.26
KRH06016	Soybean	plastid	26.24	22.29
KRH17548	Soybean	cytosol, peroxisome, plastid	14.54	20.3
KRH61286	Soybean	mitochondrion	13.83	17.81
KRH58809	Soybean	mitochondrion	17.73	15.77

Protein Annotations

MapMan:1.1.1.1.2	Gene3D:1.10.3460.10	EntrezGene:100794604	EMBL:ACUP02007123	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind
InterPro:Chlorophyll_a/b-bd_dom_sf	EnsemblPlantsGene:GLYMA_11G228800	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009416	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009628	GO:GO:0009765	GO:GO:0009768	GO:GO:0009941	GO:GO:0009987
GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298
GO:GO:0019538	GO:GO:0031409	UniProt:I1LMQ5	InterPro:IPR023329	EnsemblPlants:KRH31130	ProteinID:KRH31130
ProteinID:KRH31130.1	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF32	SUPFAM:SSF103511	TMHMM:TMhelix
UniParc:UPI000233D2A8	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:32398995..32402927

Molecular Weight (calculated)

31089.5 Da

IEP (calculated)

6.809

GRAVY (calculated)

-0.066

Length

282 amino acids

Sequence
(BLAST)

001: MATATAAAAT SYFFGTRLNN VNTTTLNNGR FHALLNFGKK KTAPQPPPKK KEVKVKPSGD RLVWFPNAEP PEWLDGSMIG DRGFDPFGFA KPAEYLQFDL
101: DSLDQNLAKN IAGDVIGTRV EVAEVKPTPF QPYSEVFGIQ RFRECELIHG RWAMLGSLGA LAVEALTGVA WQDAGKVELV EGSSYLGLPL PFSLTTLIWI
201: EVIVIGYIEF QRNAELDPEK RLYPGGRFFD PLGLANDPEE KARLQLAEIK HSRLAMVVFL IFAIQAAVTG KGPISFLATF NK

Best Arabidopsis Sequence Match ( AT2G40100.1 )
(BLAST)

001: MATTTAAAAS GIFGIRIQDP RPGTGRVQAR FGFSFGKKKP APPPKKSRQV QDDGDRLVWF PGANPPEWLD GSMIGDRGFD PFGLGKPAEY LQYDFDGLDQ
101: NLAKNVAGDI IGIIQESSEI KPTPFQPYTE VFGIQRFREC ELIHGRWAML GTLGAIAVEA LTGIAWQDAG KVELVEGSSY LGQPLPFSLT TLIWIEVLVV
201: GYIEFQRNSE LDPEKRIYPG GYFDPLGLAA DPEKLDTLKL AEIKHSRLAM VAFLIFALQA AFTGKGPVSF LATFNN

Arabidopsis Description

LHCB4.3Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178VTY4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.