CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20443193
nucleus: 21132161
mitochondrion: 21766870
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 20443193 doi

N Ahsan, Y Nanjo, H Sawada, Y Kohno, S Komatsu

National Institute of Crop Science, Tsukuba, Japan.

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42317	Soybean	mitochondrion, nucleus, plastid	98.86	98.86
KRH08634	Soybean	endoplasmic reticulum	46.01	97.58
EER97145	Sorghum	extracellular, vacuole	61.6	94.74
KRH08676	Soybean	nucleus, plastid	94.3	93.94
KRH08672	Soybean	mitochondrion, nucleus, plastid	93.54	93.18
KRH08669	Soybean	nucleus, plastid	93.54	93.18
Os01t0600900-02	Rice	plastid	87.83	88.51
Zm00001d021435_P001	Maize	plastid	87.83	88.17
EES18693	Sorghum	plastid	88.59	87.92
Zm00001d039040_P001	Maize	plastid	88.59	87.59
TraesCS5A01G454400.1	Wheat	mitochondrion, plastid	55.51	87.43
EER97143	Sorghum	plastid	87.07	87.4
Zm00001d009589_P001	Maize	plastid	87.45	86.79
Os09t0346500-04	Rice	plastid	85.93	85.28
KRH70280	Soybean	plastid	77.19	81.53
KRH74003	Soybean	nucleus, plastid	77.57	76.98
KRH14122	Soybean	nucleus, plastid	76.81	76.23
KRH22164	Soybean	nucleus, plastid	68.44	67.42
KRH27171	Soybean	mitochondrion, nucleus, plastid	68.44	67.16
KRH34336	Soybean	plastid	43.73	40.07
KRG92462	Soybean	nucleus, plastid	43.73	39.93
KRH38736	Soybean	nucleus, plastid	44.11	39.86
KRH09238	Soybean	mitochondrion, nucleus, plastid	43.73	39.79
KRH70044	Soybean	mitochondrion, nucleus, plastid	35.74	38.21
KRH08384	Soybean	nucleus, plastid	35.74	38.21
KRH37524	Soybean	plastid	35.36	35.77
KRH17548	Soybean	cytosol, peroxisome, plastid	27.0	35.15
KRH12566	Soybean	plastid	34.6	35.0
KRH06016	Soybean	plastid	41.83	33.13
KRH74072	Soybean	mitochondrion, nucleus, plastid	34.22	32.61
KRH06319	Soybean	nucleus, plastid	33.46	32.59
KRH54568	Soybean	nucleus, plastid	31.18	32.54
KRH14048	Soybean	nucleus, plastid	33.84	32.25
KRH63318	Soybean	plastid	30.8	32.14
KRH65776	Soybean	nucleus, plastid	34.22	31.03
KRH75874	Soybean	mitochondrion, nucleus, plastid	34.22	31.03
KRH58296	Soybean	plastid	27.76	30.04
KRH47742	Soybean	nucleus	31.94	29.79
KRG97750	Soybean	plastid	30.8	29.14
KRH31130	Soybean	nucleus, plastid	30.8	28.72
KRH43915	Soybean	mitochondrion, nucleus, plastid	28.14	28.35
KRH10515	Soybean	mitochondrion, nucleus, plastid	27.76	28.08
KRH42185	Soybean	mitochondrion, nucleus, plastid	27.38	27.91
KRH68993	Soybean	plastid	32.32	27.6
KRH51989	Soybean	nucleus	29.66	27.37
KRH58809	Soybean	mitochondrion	28.52	23.66
KRH61286	Soybean	mitochondrion	15.21	18.26

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	EntrezGene:547862	EMBL:ACUP02003262	EMBL:BT098613	UniProt:C6TLM4
InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	ncoils:Coil	EnsemblPlantsGene:GLYMA_05G128000	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009765
GO:GO:0009768	GO:GO:0009941	GO:GO:0009987	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0031409	InterPro:IPR023329
EnsemblPlants:KRH58441	ProteinID:KRH58441	ProteinID:KRH58441.1	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF55
SUPFAM:SSF103511	UniParc:UPI0001B1708D	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:32149719..32150849

Molecular Weight (calculated)

27907.3 Da

IEP (calculated)

5.085

GRAVY (calculated)

-0.019

Length

263 amino acids

Sequence
(BLAST)

001: MAAASSMALS SPSLAGKAVK LGPSAPEVGR VSMRKTVTKQ ASSGSPWYGP DRVKYLGPFS GEPPSYLTGE FPGDYGWDTA GLSADPETFA RNRELEVIHS
101: RWAMLGALGC VFPELLSRNG VKFGEAVWFK AGSQIFSEGG LDYLGNPSLV HAQSILAIWA TQVILMGAVE GYRIAGGPLG EVTDPIYPGG SFDPLGLADD
201: PEAFAELKVK ELKNGRLAMF SMFGFFVQAI VTGKGPLENL ADHLADPVNN NAWAYATNFV PGK

Best Arabidopsis Sequence Match ( AT1G29930.1 )
(BLAST)

001: MAASTMALSS PAFAGKAVKL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK

Arabidopsis Description

LHCB1.3Chlorophyll a-b binding protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P04778]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.