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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 8
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
plastid: 19688749
plastid: 20701693
plastid: 21196305
plastid: 22065420
plastid: 22833285
plastid: 23198870
mitochondrion: 27297264
msms PMID: 20701693 doi
A Campos, PK Carvajal-Vallejos, E Villalobos, CF Franco, AM Almeida, AV Coelho, JM Torné, M Santos
Instituto de Tecnologia Química e Biológica (ITQB), Universidade Nova de Lisboa, Oeiras, Portugal.
msms PMID: 19688749 doi
C Zörb, R Herbst, C Forreiter, S Schubert
Institute of Plant Nutrition (IFZ), Justus Liebig University Giessen, Giessen, Germany. czoerb@plantnutrition.uni-kiel.de
msms PMID: 27297264 doi
D Dahal, KJ Newton, BP Mooney
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID: 23198870 doi
M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
msms PMID: 22833285 doi
R Fristedt, W Wasilewska, E Romanowska, AV Vener
Department of Clinical and Experimental Medicine, Linköping University, Linköping, Sweden.
msms PMID: 22065420 doi
W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.
msms PMID: 21196305
XY Liu, YD Wu, ZY Shen, Z Shen, HH Li, XM Yu, XF Yan, CH Guo, BC Wang
Key Laboratory of Forest Tree Genetic Improvement and Biotechnology, Ministry of Education, Northeast Forestry University, Harbin, China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER97143 Sorghum plastid 97.71 97.71
EER97145 Sorghum extracellular, vacuole 63.36 97.08
Os01t0600900-02 Rice plastid 91.22 91.57
Zm00001d039040_P001 Maize plastid 92.37 90.98
Zm00001d044401_P001 Maize plastid 90.84 90.15
Zm00001d011285_P001 Maize plastid 90.84 90.15
Zm00001d044399_P001 Maize plastid 90.84 90.15
Zm00001d044402_P001 Maize plastid 90.84 90.15
Zm00001d009589_P001 Maize plastid 90.84 89.81
Os09t0346500-04 Rice plastid 90.46 89.43
Zm00001d044396_P001 Maize plastid 89.69 89.02
KRH08669 Soybean nucleus, plastid 89.31 88.64
KRH08676 Soybean nucleus, plastid 89.31 88.64
TraesCS5A01G454400.1 Wheat mitochondrion, plastid 56.49 88.62
KRH08672 Soybean mitochondrion, nucleus, plastid 88.93 88.26
KRH42317 Soybean mitochondrion, nucleus, plastid 88.55 88.21
KRH58441 Soybean mitochondrion, plastid 88.17 87.83
Zm00001d033132_P001 Maize plastid 77.48 78.08
Zm00001d033136_P001 Maize plastid 77.48 78.08
KRH70280 Soybean plastid 72.9 76.71
Zm00001d013766_P001 Maize plastid 37.02 67.36
Zm00001d021784_P001 Maize plastid 68.7 66.91
Zm00001d006592_P001 Maize plastid 25.57 54.47
Zm00001d007267_P002 Maize plastid 45.8 42.4
Zm00001d048998_P001 Maize plastid 45.42 42.05
Zm00001d020002_P002 Maize plastid 44.27 36.83
Zm00001d015385_P001 Maize plastid 32.82 35.1
Zm00001d006663_P001 Maize plastid 33.97 34.23
Zm00001d021906_P001 Maize plastid 34.35 33.33
Zm00001d046786_P001 Maize plastid 33.97 33.33
Zm00001d005814_P002 Maize plastid 33.59 32.47
Zm00001d032051_P001 Maize mitochondrion 11.07 32.22
Zm00001d018157_P001 Maize plastid 32.82 31.97
Zm00001d021763_P001 Maize plastid 35.11 31.62
Zm00001d032197_P001 Maize plastid 29.77 31.58
Zm00001d050403_P001 Maize plastid 29.01 31.15
Zm00001d006587_P001 Maize plastid 34.35 30.93
Zm00001d001857_P001 Maize plastid 27.1 28.06
Zm00001d026599_P001 Maize plastid 25.57 27.02
Zm00001d040012_P001 Maize plastid 11.83 22.79
Zm00001d024372_P001 Maize plastid 18.32 20.25
Zm00001d011218_P001 Maize plastid 11.83 18.9
Protein Annotations
MapMan:1.1.1.1.1Gene3D:1.10.3460.10EntrezGene:100281248UniProt:B4FNR1EMBL:BT038749ProteinID:CAA32900.1
InterPro:Chloro_AB-bd_plnInterPro:Chloroa_b-bindInterPro:Chlorophyll_a/b-bd_dom_sfEMBL:EU953420EMBL:EU956442GO:GO:0003674
GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006091
GO:GO:0006464GO:GO:0008150GO:GO:0008152GO:GO:0009507GO:GO:0009522GO:GO:0009523
GO:GO:0009535GO:GO:0009536GO:GO:0009579GO:GO:0009765GO:GO:0009987GO:GO:0015979
GO:GO:0016020GO:GO:0016021GO:GO:0016168GO:GO:0018298GO:GO:0019538GO:GO:0046872
InterPro:IPR023329ProteinID:ONM57123.1UniProt:P12329PFAM:PF00504PANTHER:PTHR21649PANTHER:PTHR21649:SF56
SUPFAM:SSF103511UniParc:UPI0000127113EnsemblPlantsGene:Zm00001d021435EnsemblPlants:Zm00001d021435_P001EnsemblPlants:Zm00001d021435_T001SEG:seg
Description
light harvesting chlorophyll a/b binding protein2Chlorophyll a-b binding protein 1%2C chloroplastic
Coordinates
chr7:-:152283433..152284280
Molecular Weight (calculated)
27817.3 Da
IEP (calculated)
4.904
GRAVY (calculated)
0.039
Length
262 amino acids
Sequence
(BLAST)
001: MAASTMAISS TAMAGTPIKV GSFGEGRITM RKTVGKPKVA ASGSPWYGPD RVKYLGPFSG EPPSYLTGEF PGDYGWDTAG LSADPETFAK NRELEVIHSR
101: WAMLGALGCV FPELLSRNGV KFGEAVWFKA GSQIFSEGGL DYLGNPSLIH AQSILAIWAC QVVLMGAVEG YRIAGGPLGE VVDPLYPGGS FDPLGLADDP
201: EAFAELKVKE LKNGRLAMFS MFGFFVQAIV TGKGPLENLA DHIADPVNNN AWAYATNFVP GN
Best Arabidopsis Sequence Match ( AT2G34420.1 )
(BLAST)
001: MASSTMALSS PAFAGKAVKP AASDVLGSGR VTMRKTVAKP KGPSGSPWYG SDRVKYLGPF SGEPPSYLTG EFPGDYGWDT AGLSADPETF ARNRELEVIH
101: SRWAMLGALG CVFPELLARN GVKFGEAVWF KAGSQIFSDG GLDYLGNPSL VHAQSILAIW ATQVILMGAV EGYRVAGDGP LGEAEDLLYP GGSFDPLGLA
201: TDPEAFAELK VKELKNGRLA MFSMFGFFVQ AIVTGKGPLE NLADHLADPV NNNAWAFATN FVPGK
Arabidopsis Description
LHB1B2Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q39141]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.