Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
19688749
plastid: 20701693 plastid: 21196305 plastid: 22065420 plastid: 22833285 plastid: 23198870 mitochondrion: 27297264 |
msms PMID:
20701693
doi
Instituto de Tecnologia Química e Biológica (ITQB), Universidade Nova de Lisboa, Oeiras, Portugal.
msms PMID:
19688749
doi
Institute of Plant Nutrition (IFZ), Justus Liebig University Giessen, Giessen, Germany. czoerb@plantnutrition.uni-kiel.de
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
23198870
doi
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
msms PMID:
22833285
doi
Department of Clinical and Experimental Medicine, Linköping University, Linköping, Sweden.
msms PMID:
22065420
doi
Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.
msms PMID:
21196305
Key Laboratory of Forest Tree Genetic Improvement and Biotechnology, Ministry of Education, Northeast Forestry University, Harbin, China.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
EER97143 | Sorghum | plastid | 97.71 | 97.71 |
EER97145 | Sorghum | extracellular, vacuole | 63.36 | 97.08 |
Os01t0600900-02 | Rice | plastid | 91.22 | 91.57 |
Zm00001d039040_P001 | Maize | plastid | 92.37 | 90.98 |
Zm00001d044401_P001 | Maize | plastid | 90.84 | 90.15 |
Zm00001d011285_P001 | Maize | plastid | 90.84 | 90.15 |
Zm00001d044399_P001 | Maize | plastid | 90.84 | 90.15 |
Zm00001d044402_P001 | Maize | plastid | 90.84 | 90.15 |
Zm00001d009589_P001 | Maize | plastid | 90.84 | 89.81 |
Os09t0346500-04 | Rice | plastid | 90.46 | 89.43 |
Zm00001d044396_P001 | Maize | plastid | 89.69 | 89.02 |
KRH08669 | Soybean | nucleus, plastid | 89.31 | 88.64 |
KRH08676 | Soybean | nucleus, plastid | 89.31 | 88.64 |
TraesCS5A01G454400.1 | Wheat | mitochondrion, plastid | 56.49 | 88.62 |
KRH08672 | Soybean | mitochondrion, nucleus, plastid | 88.93 | 88.26 |
KRH42317 | Soybean | mitochondrion, nucleus, plastid | 88.55 | 88.21 |
KRH58441 | Soybean | mitochondrion, plastid | 88.17 | 87.83 |
Zm00001d033132_P001 | Maize | plastid | 77.48 | 78.08 |
Zm00001d033136_P001 | Maize | plastid | 77.48 | 78.08 |
KRH70280 | Soybean | plastid | 72.9 | 76.71 |
Zm00001d013766_P001 | Maize | plastid | 37.02 | 67.36 |
Zm00001d021784_P001 | Maize | plastid | 68.7 | 66.91 |
Zm00001d006592_P001 | Maize | plastid | 25.57 | 54.47 |
Zm00001d007267_P002 | Maize | plastid | 45.8 | 42.4 |
Zm00001d048998_P001 | Maize | plastid | 45.42 | 42.05 |
Zm00001d020002_P002 | Maize | plastid | 44.27 | 36.83 |
Zm00001d015385_P001 | Maize | plastid | 32.82 | 35.1 |
Zm00001d006663_P001 | Maize | plastid | 33.97 | 34.23 |
Zm00001d021906_P001 | Maize | plastid | 34.35 | 33.33 |
Zm00001d046786_P001 | Maize | plastid | 33.97 | 33.33 |
Zm00001d005814_P002 | Maize | plastid | 33.59 | 32.47 |
Zm00001d032051_P001 | Maize | mitochondrion | 11.07 | 32.22 |
Zm00001d018157_P001 | Maize | plastid | 32.82 | 31.97 |
Zm00001d021763_P001 | Maize | plastid | 35.11 | 31.62 |
Zm00001d032197_P001 | Maize | plastid | 29.77 | 31.58 |
Zm00001d050403_P001 | Maize | plastid | 29.01 | 31.15 |
Zm00001d006587_P001 | Maize | plastid | 34.35 | 30.93 |
Zm00001d001857_P001 | Maize | plastid | 27.1 | 28.06 |
Zm00001d026599_P001 | Maize | plastid | 25.57 | 27.02 |
Zm00001d040012_P001 | Maize | plastid | 11.83 | 22.79 |
Zm00001d024372_P001 | Maize | plastid | 18.32 | 20.25 |
Zm00001d011218_P001 | Maize | plastid | 11.83 | 18.9 |
Protein Annotations
MapMan:1.1.1.1.1 | Gene3D:1.10.3460.10 | EntrezGene:100281248 | UniProt:B4FNR1 | EMBL:BT038749 | ProteinID:CAA32900.1 |
InterPro:Chloro_AB-bd_pln | InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf | EMBL:EU953420 | EMBL:EU956442 | GO:GO:0003674 |
GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006091 |
GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009522 | GO:GO:0009523 |
GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009765 | GO:GO:0009987 | GO:GO:0015979 |
GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016168 | GO:GO:0018298 | GO:GO:0019538 | GO:GO:0046872 |
InterPro:IPR023329 | ProteinID:ONM57123.1 | UniProt:P12329 | PFAM:PF00504 | PANTHER:PTHR21649 | PANTHER:PTHR21649:SF56 |
SUPFAM:SSF103511 | UniParc:UPI0000127113 | EnsemblPlantsGene:Zm00001d021435 | EnsemblPlants:Zm00001d021435_P001 | EnsemblPlants:Zm00001d021435_T001 | SEG:seg |
Description
light harvesting chlorophyll a/b binding protein2Chlorophyll a-b binding protein 1%2C chloroplastic
Coordinates
chr7:-:152283433..152284280
Molecular Weight (calculated)
27817.3 Da
IEP (calculated)
4.904
GRAVY (calculated)
0.039
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASTMAISS TAMAGTPIKV GSFGEGRITM RKTVGKPKVA ASGSPWYGPD RVKYLGPFSG EPPSYLTGEF PGDYGWDTAG LSADPETFAK NRELEVIHSR
101: WAMLGALGCV FPELLSRNGV KFGEAVWFKA GSQIFSEGGL DYLGNPSLIH AQSILAIWAC QVVLMGAVEG YRIAGGPLGE VVDPLYPGGS FDPLGLADDP
201: EAFAELKVKE LKNGRLAMFS MFGFFVQAIV TGKGPLENLA DHIADPVNNN AWAYATNFVP GN
101: WAMLGALGCV FPELLSRNGV KFGEAVWFKA GSQIFSEGGL DYLGNPSLIH AQSILAIWAC QVVLMGAVEG YRIAGGPLGE VVDPLYPGGS FDPLGLADDP
201: EAFAELKVKE LKNGRLAMFS MFGFFVQAIV TGKGPLENLA DHIADPVNNN AWAYATNFVP GN
001: MASSTMALSS PAFAGKAVKP AASDVLGSGR VTMRKTVAKP KGPSGSPWYG SDRVKYLGPF SGEPPSYLTG EFPGDYGWDT AGLSADPETF ARNRELEVIH
101: SRWAMLGALG CVFPELLARN GVKFGEAVWF KAGSQIFSDG GLDYLGNPSL VHAQSILAIW ATQVILMGAV EGYRVAGDGP LGEAEDLLYP GGSFDPLGLA
201: TDPEAFAELK VKELKNGRLA MFSMFGFFVQ AIVTGKGPLE NLADHLADPV NNNAWAFATN FVPGK
101: SRWAMLGALG CVFPELLARN GVKFGEAVWF KAGSQIFSDG GLDYLGNPSL VHAQSILAIW ATQVILMGAV EGYRVAGDGP LGEAEDLLYP GGSFDPLGLA
201: TDPEAFAELK VKELKNGRLA MFSMFGFFVQ AIVTGKGPLE NLADHLADPV NNNAWAFATN FVPGK
Arabidopsis Description
LHB1B2Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q39141]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.