Factsheet for Zm00001d011285_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 2
plastid 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01022	Sorghum	plastid	97.73	97.36
Zm00001d044396_P001	Maize	plastid	96.59	96.59
Zm00001d044399_P001	Maize	plastid	96.59	96.59
Zm00001d044401_P001	Maize	plastid	96.59	96.59
Zm00001d044402_P001	Maize	plastid	96.59	96.59
GSMUA_Achr5P09230_001	Banana	cytosol, extracellular, plastid	48.48	96.24
Os01t0720500-01	Rice	plastid	93.18	92.83
TraesCS5A01G350600.1	Wheat	plastid	91.67	91.32
TraesCS5D01G357600.1	Wheat	plastid	91.67	91.32
TraesCS5B01G353200.1	Wheat	plastid	91.29	90.94
Zm00001d021435_P001	Maize	plastid	90.15	90.84
Zm00001d039040_P001	Maize	plastid	91.29	90.6
HORVU5Hr1G087250.1	Barley	plastid	91.29	90.6
HORVU5Hr1G124160.1	Barley	plastid	91.29	90.6
Zm00001d009589_P001	Maize	plastid	90.53	90.19
GSMUA_Achr2P09300_001	Banana	plasma membrane, plastid, unclear	90.91	89.89
TraesCS1B01G432700.1	Wheat	plastid	89.02	88.35
TraesCS1A01G403300.1	Wheat	plastid	89.02	88.35
HORVU1Hr1G088880.1	Barley	plastid	89.02	88.35
VIT_19s0014g00160.t01	Wine grape	plastid	89.02	88.02
TraesCS1D01G411300.1	Wheat	plastid	88.64	87.97
VIT_10s0003g02890.t01	Wine grape	plastid	87.88	87.88
VIT_10s0003g02900.t01	Wine grape	plastid	87.88	87.88
VIT_07s0005g02220.t01	Wine grape	plastid	86.74	87.07
GSMUA_Achr4P07890_001	Banana	plastid	50.38	83.65
VIT_12s0028g00320.t01	Wine grape	plastid	85.23	83.33
HORVU1Hr1G088870.2	Barley	plastid	89.02	81.31
PGSC0003DMT400034902	Potato	plastid	39.02	78.63
Zm00001d033136_P001	Maize	plastid	75.38	76.54
Zm00001d033132_P001	Maize	plastid	75.38	76.54
Zm00001d013766_P001	Maize	plastid	37.12	68.06
Zm00001d021784_P001	Maize	plastid	68.18	66.91
Zm00001d006592_P001	Maize	plastid	26.14	56.1
Zm00001d007267_P002	Maize	plastid	46.59	43.46
Zm00001d048998_P001	Maize	plastid	46.21	43.11
Zm00001d020002_P002	Maize	plastid	45.45	38.1
Zm00001d015385_P001	Maize	plastid	33.33	35.92
Zm00001d006663_P001	Maize	plastid	34.47	35.0
Zm00001d046786_P001	Maize	plastid	34.85	34.46
Zm00001d021906_P001	Maize	plastid	34.47	33.7
Zm00001d018157_P001	Maize	plastid	34.09	33.46
Zm00001d005814_P002	Maize	plastid	34.09	33.21
Zm00001d032197_P001	Maize	plastid	30.68	32.79
Zm00001d050403_P001	Maize	plastid	29.92	32.38
Zm00001d021763_P001	Maize	plastid	34.85	31.62
Zm00001d032051_P001	Maize	mitochondrion	10.61	31.11
Zm00001d006587_P001	Maize	plastid	34.09	30.93
Zm00001d001857_P001	Maize	plastid	26.89	28.06
Zm00001d026599_P001	Maize	plastid	25.38	27.02
Zm00001d040012_P001	Maize	plastid	12.5	24.26
Zm00001d024372_P001	Maize	plastid	18.56	20.68
Zm00001d011218_P001	Maize	plastid	12.12	19.51

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	EntrezGene:100274453	ProteinID:AQK96426.1	UniProt:B4G143	EMBL:BT043081
InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	EMBL:EU956509	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0046872	InterPro:IPR023329
PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF56	SUPFAM:SSF103511	UniParc:UPI0000F03E07	EnsemblPlantsGene:Zm00001d011285
EnsemblPlants:Zm00001d011285_P001	EnsemblPlants:Zm00001d011285_T001	:	:	:	:

Description

light harvesting chlorophyll a/b binding protein1photosystem II light harvesting complex gene B1B2

Coordinates

chr8:+:145825712..145826506

Molecular Weight (calculated)

28047.6 Da

IEP (calculated)

5.341

GRAVY (calculated)

0.044

Length

264 amino acids

Sequence
(BLAST)

001: MAAATMALTS RALVGKPATS TRDVFGEGRI TMRKTAGKPK PAASGSPWYG ADRVLYLGPL SGQPPSYLTG EFPGDYGWDT AGLSADPETF AKNRELEVIH
101: CRWAMLGALG CVFPELLARN GVKFGEAVWF KAGSQIFSEG GLDYLGNPSL IHAQSILAIW ACQVVLMGAV EGYRIAGGPL GEVVDPLYPG GSFDPLGLAD
201: DPEAFAELKV KEIKNGRLAM FSMFGFFVQA IVTGKGPVEN LADHLADPVN NNAWAYATNF VPGK

Best Arabidopsis Sequence Match ( AT2G34420.1 )
(BLAST)

001: MASSTMALSS PAFAGKAVKP AASDVLGSGR VTMRKTVAKP KGPSGSPWYG SDRVKYLGPF SGEPPSYLTG EFPGDYGWDT AGLSADPETF ARNRELEVIH
101: SRWAMLGALG CVFPELLARN GVKFGEAVWF KAGSQIFSDG GLDYLGNPSL VHAQSILAIW ATQVILMGAV EGYRVAGDGP LGEAEDLLYP GGSFDPLGLA
201: TDPEAFAELK VKELKNGRLA MFSMFGFFVQ AIVTGKGPLE NLADHLADPV NNNAWAFATN FVPGK

Arabidopsis Description

LHB1B2Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q39141]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.