CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14122	Soybean	nucleus, plastid	98.87	98.87
VIT_12s0057g00630.t01	Wine grape	plastid	91.7	91.7
GSMUA_Achr4P33040_001	Banana	plastid, unclear	90.19	90.53
Solyc12g006140.1.1	Tomato	plastid	90.19	90.19
PGSC0003DMT400010985	Potato	plastid	90.19	90.19
PGSC0003DMT400015740	Potato	plastid	89.43	89.43
CDY15050	Canola	plastid	89.06	89.06
Bra013183.1-P	Field mustard	plastid	88.68	88.68
Solyc07g047850.2.1	Tomato	plastid	88.68	88.68
CDX93077	Canola	plastid	88.68	88.68
Bra025297.1-P	Field mustard	plastid	88.68	88.35
CDY13732	Canola	plastid	88.68	88.35
CDY49770	Canola	plastid	88.68	88.35
AT2G05070.1	Thale cress	plastid	88.3	88.3
CDY20039	Canola	plastid	88.3	88.3
Bra039070.1-P	Field mustard	plastid	88.3	88.3
Os03t0592500-01	Rice	extracellular	87.55	88.21
CDY03989	Canola	plastid	88.3	87.97
CDY00149	Canola	plastid	88.3	87.97
CDX83726	Canola	plastid	87.92	87.59
Zm00001d033132_P001	Maize	plastid	85.66	87.31
Zm00001d033136_P001	Maize	plastid	85.66	87.31
EER93861	Sorghum	plastid	86.04	87.02
Bra033022.1-P	Field mustard	plastid	83.4	85.66
KRH08634	Soybean	endoplasmic reticulum	40.0	85.48
TraesCS5D01G329200.1	Wheat	plastid	84.53	85.17
TraesCS5B01G322900.1	Wheat	plastid	84.53	85.17
TraesCS5A01G322500.1	Wheat	plastid	84.53	85.17
AT3G27690.2	Thale cress	golgi, plastid	88.3	78.52
KRH08669	Soybean	nucleus, plastid	77.36	77.65
KRH08672	Soybean	mitochondrion, nucleus, plastid	77.36	77.65
KRH08676	Soybean	nucleus, plastid	77.36	77.65
KRH58441	Soybean	mitochondrion, plastid	76.98	77.57
KRH42317	Soybean	mitochondrion, nucleus, plastid	76.98	77.57
Zm00001d013766_P001	Maize	plastid	39.25	72.22
KRH70280	Soybean	plastid	64.91	69.08
AT2G05100.2	Thale cress	plastid	82.26	68.77
KRH22164	Soybean	nucleus, plastid	67.92	67.42
KRH27171	Soybean	mitochondrion, nucleus, plastid	67.92	67.16
HORVU5Hr1G082420.1	Barley	plastid	83.77	64.72
KRH34336	Soybean	plastid	41.51	38.33
KRG92462	Soybean	nucleus, plastid	41.51	38.19
KRH09238	Soybean	mitochondrion, nucleus, plastid	40.75	37.37
KRH38736	Soybean	nucleus, plastid	40.75	37.11
KRH17548	Soybean	cytosol, peroxisome, plastid	26.42	34.65
KRH70044	Soybean	mitochondrion, nucleus, plastid	31.7	34.15
KRH08384	Soybean	nucleus, plastid	30.94	33.33
KRH06016	Soybean	plastid	41.51	33.13
KRH14048	Soybean	nucleus, plastid	33.96	32.61
KRH74072	Soybean	mitochondrion, nucleus, plastid	33.96	32.61
KRH37524	Soybean	plastid	31.7	32.31
KRH12566	Soybean	plastid	31.7	32.31
KRH06319	Soybean	nucleus, plastid	31.32	30.74
KRH65776	Soybean	nucleus, plastid	33.21	30.34
KRH75874	Soybean	mitochondrion, nucleus, plastid	33.21	30.34
KRH63318	Soybean	plastid	28.68	30.16
KRH54568	Soybean	nucleus, plastid	28.68	30.16
KRH47742	Soybean	nucleus	30.57	28.72
KRG97750	Soybean	plastid	29.81	28.42
KRH51989	Soybean	nucleus	29.81	27.72
KRH31130	Soybean	nucleus, plastid	29.43	27.66
KRH58296	Soybean	plastid	24.53	26.75
KRH68993	Soybean	plastid	30.57	26.3
KRH42185	Soybean	mitochondrion, nucleus, plastid	24.15	24.81
KRH43915	Soybean	mitochondrion, nucleus, plastid	24.15	24.52
KRH10515	Soybean	mitochondrion, nucleus, plastid	23.77	24.23
KRH58809	Soybean	mitochondrion	26.79	22.4
KRH61286	Soybean	mitochondrion	15.47	18.72

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	EntrezGene:100793702	EMBL:ACUP02001293	EMBL:BT093870	UniProt:C6T8R7
InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	EnsemblPlantsGene:GLYMA_02G305400	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009765	GO:GO:0009768
GO:GO:0009941	GO:GO:0009987	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0031409	InterPro:IPR023329	EnsemblPlants:KRH74003
ProteinID:KRH74003	ProteinID:KRH74003.1	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF33	SUPFAM:SSF103511
UniParc:UPI0001B162E5	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:48024273..48025698

Molecular Weight (calculated)

28628.1 Da

IEP (calculated)

5.341

GRAVY (calculated)

-0.115

Length

265 amino acids

Sequence
(BLAST)

001: MATSAIQQSA FAGQTALKQL NELVRKTGGA GKGRTNMRRT VKSAPQSIWY GPDRPKYLGP FSEQIPSYLT GEFPGDYGWD TAGLSADPET FARNRELEVI
101: HSRWAMLGAL GCTFPEILEK NGVKFGEAVW FKAGSQIFSE GGLDYLGNPN LIHAQSILAI WAVQVVLMGF VEGYRVGGGP LGEGLDPIYP GGAFDPLGLA
201: DDPDAFAELK VKELKNGRLA MFSMFGFFVQ AIVTGKGPIQ NLYDHVADPV ANNAWAYATN FVPGQ

Best Arabidopsis Sequence Match ( AT2G05100.1 )
(BLAST)

001: MATSAIQQSS FAGQTALKPS NELLRKVGVS GGGRVTMRRT VKSTPQSIWY GPDRPKYLGP FSENTPSYLT GEYPGDYGWD TAGLSADPET FAKNRELEVI
101: HSRWAMLGAL GCTFPEILSK NGVKFGEAVW FKAGSQIFSE GGLDYLGNPN LIHAQSILAI WAVQVVLMGF IEGYRIGGGP LGEGLDPLYP GGAFDPLNLA
201: EDPEAFSELK VKELKNGRLA MFSMFGFFVQ AIVTGKGPIE NLFDHLADPV ANNAWSYATN FVPGN

Arabidopsis Description

LHCB2.1photosystem II light harvesting complex gene 2.1 [Source:TAIR;Acc:AT2G05100]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.