Factsheet for PGSC0003DMT400015740

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g047850.2.1	Tomato	plastid	98.87	98.87
PGSC0003DMT400010985	Potato	plastid	94.72	94.72
VIT_12s0057g00630.t01	Wine grape	plastid	92.45	92.45
GSMUA_Achr4P33040_001	Banana	plastid, unclear	89.43	89.77
KRH74003	Soybean	nucleus, plastid	89.43	89.43
KRH14122	Soybean	nucleus, plastid	89.43	89.43
Os03t0592500-01	Rice	extracellular	88.68	89.35
PGSC0003DMT400035006	Potato	cytosol, extracellular, vacuole	53.58	88.75
PGSC0003DMT400035007	Potato	cytosol, extracellular, vacuole	53.58	88.75
Zm00001d033132_P001	Maize	plastid	86.42	88.08
Zm00001d033136_P001	Maize	plastid	86.42	88.08
EER93861	Sorghum	plastid	86.79	87.79
CDY15050	Canola	plastid	87.55	87.55
CDX93077	Canola	plastid	87.17	87.17
Bra013183.1-P	Field mustard	plastid	87.17	87.17
AT2G05070.1	Thale cress	plastid	86.04	86.04
CDY00149	Canola	plastid	86.04	85.71
CDY13732	Canola	plastid	86.04	85.71
CDY49770	Canola	plastid	86.04	85.71
Bra025297.1-P	Field mustard	plastid	86.04	85.71
CDY20039	Canola	plastid	85.66	85.66
Bra039070.1-P	Field mustard	plastid	85.66	85.66
TraesCS5A01G322500.1	Wheat	plastid	84.91	85.55
TraesCS5B01G322900.1	Wheat	plastid	84.91	85.55
TraesCS5D01G329200.1	Wheat	plastid	84.91	85.55
CDY03989	Canola	plastid	85.66	85.34
CDX83726	Canola	plastid	85.28	84.96
Bra033022.1-P	Field mustard	plastid	80.75	82.95
PGSC0003DMT400021390	Potato	plastid	78.87	80.38
PGSC0003DMT400021392	Potato	plastid	78.49	80.0
PGSC0003DMT400034892	Potato	plastid	78.87	79.77
PGSC0003DMT400021389	Potato	plastid	79.62	79.62
PGSC0003DMT400092927	Potato	plastid	79.62	79.62
PGSC0003DMT400021391	Potato	plastid	78.11	79.62
PGSC0003DMT400034897	Potato	plastid	78.11	79.01
PGSC0003DMT400021422	Potato	plastid	78.87	78.87
PGSC0003DMT400034898	Potato	plastid	77.36	78.24
PGSC0003DMT400034893	Potato	plastid	76.98	77.86
PGSC0003DMT400043054	Potato	plastid	78.11	77.53
PGSC0003DMT400034896	Potato	plastid	78.11	77.53
PGSC0003DMT400034899	Potato	plastid	78.11	77.53
AT3G27690.2	Thale cress	golgi, plastid	87.17	77.52
PGSC0003DMT400034894	Potato	plastid	54.34	73.85
Zm00001d013766_P001	Maize	plastid	39.62	72.92
PGSC0003DMT400049550	Potato	plastid	68.68	69.47
PGSC0003DMT400022072	Potato	plastid	69.43	69.43
PGSC0003DMT400022698	Potato	plastid	79.62	69.18
AT2G05100.2	Thale cress	plastid	80.0	66.88
HORVU5Hr1G082420.1	Barley	plastid	85.66	66.18
PGSC0003DMT400034902	Potato	plastid	32.45	65.65
PGSC0003DMT400019031	Potato	plastid	79.25	64.02
PGSC0003DMT400068129	Potato	plastid	43.02	40.0
PGSC0003DMT400037285	Potato	extracellular, vacuole	22.64	38.46
PGSC0003DMT400059995	Potato	plastid	33.21	35.77
PGSC0003DMT400060313	Potato	plastid	32.83	35.37
PGSC0003DMT400025715	Potato	plastid	41.89	34.91
PGSC0003DMT400007514	Potato	plastid	32.08	32.69
PGSC0003DMT400054836	Potato	plastid	33.58	32.6
PGSC0003DMT400020100	Potato	plastid	33.21	32.23
PGSC0003DMT400021871	Potato	plastid	34.34	31.93
PGSC0003DMT400083158	Potato	plastid	29.43	31.2
PGSC0003DMT400050232	Potato	plastid	28.68	30.28
PGSC0003DMT400032790	Potato	plastid	26.04	26.95
PGSC0003DMT400032791	Potato	plastid	26.04	26.95
PGSC0003DMT400011381	Potato	plastid	21.51	21.43

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	EntrezGene:102594074	ProteinID:AFW90566	ProteinID:AFW90566.1	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0018298	GO:GO:0019538	InterPro:IPR023329	EMBL:JX576210	UniProt:M1A6H3	PFAM:PF00504
EnsemblPlantsGene:PGSC0003DMG400006149	PGSC:PGSC0003DMG400006149	EnsemblPlants:PGSC0003DMT400015740	PANTHER:PTHR21649	PANTHER:PTHR21649:SF33	SUPFAM:SSF103511
UniParc:UPI0002967F30	RefSeq:XP_006363015.1	:	:	:	:

Description

Chlorophyll a-b binding protein 4, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400006149]

Coordinates

chr7:-:44392501..44393503

Molecular Weight (calculated)

28719.2 Da

IEP (calculated)

5.123

GRAVY (calculated)

-0.089

Length

265 amino acids

Sequence
(BLAST)

001: MATSAIQQSA FVGQAVGKSQ NEFVRKVGSF GEGRITMRRT VKSAPQSIWY GEDRPKYLGP FSEQTPSYLT GEFPGDYGWD TAGLSADPET FARNRELEVI
101: HCRWAMLGAL GCVFPEILSK NGVKFGEAVW FKAGSQIFSE GGLDYLGNPN LVHAQSILAI WACQVVLMGF VEGYRVGGGP LGEGLDKIYP GGAFDPLGLA
201: DDPEAFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPIE NLSDHINDPV ANNAWAYATN FVPGK

Best Arabidopsis Sequence Match ( AT3G27690.2 )
(BLAST)

001: MNTLLYKRRL QFNNISFSLT SFLFLCSCLE EAMATSAIQH SSFAGQTTLK PSNDLLRKIG ASNGGGRIIM RRTVKSTPQS IWYGPDRPKY LGPFSENTPS
101: YLTGEYPGDY GWDTAGLSAD PETFAKNREL EVIHSRWAML GALGCTFPEI LSKNGVKFGE AVWFKAGSQI FSEGGLDYLG NPNLIHAQSI LAIWACQVVL
201: MGFIEGYRIG GGPLGEGLDP LYPGGAFDPL NLAEDPEAFS ELKVKELKNG RLAMFSMFGF FVQAIVTGKG PIENLFDHIA DPVANNAWAY ATNFVPGK

Arabidopsis Description

LHCB2.4Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1I9LMB4]
SUBAcon: [golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.