Factsheet for PGSC0003DMT400032791

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g105030.2.1	Tomato	plastid	97.66	97.66
CDX83967	Canola	extracellular, vacuole	8.59	95.65
PGSC0003DMT400032790	Potato	plastid	92.97	92.97
KRH10515	Soybean	mitochondrion, nucleus, plastid	87.5	86.15
VIT_12s0055g01110.t01	Wine grape	plastid	86.33	85.99
KRH43915	Soybean	mitochondrion, nucleus, plastid	87.5	85.82
GSMUA_Achr10P...	Banana	unclear	48.83	83.89
CDY33376	Canola	plastid	80.86	80.23
CDY35042	Canola	plastid	80.47	79.84
Bra026099.1-P	Field mustard	plastid	80.08	79.46
Zm00001d026599_P001	Maize	plastid	76.56	79.03
OQU82564	Sorghum	plastid	78.52	78.82
AT1G15820.1	Thale cress	plastid	79.3	78.68
Bra016650.1-P	Field mustard	plastid	78.91	78.6
CDY52865	Canola	plastid	79.3	78.38
CDX96833	Canola	plastid	79.3	78.38
Bra026745.1-P	Field mustard	plastid	79.3	78.38
CDX81735	Canola	plastid	78.91	77.99
Zm00001d001857_P001	Maize	plastid	76.56	77.47
Os04t0457000-01	Rice	extracellular, plasma membrane, plastid	74.22	75.4
TraesCS2D01G320900.1	Wheat	plastid	75.0	75.29
TraesCS2B01G340300.1	Wheat	plastid	75.0	75.29
TraesCS2A01G342600.1	Wheat	plastid	75.0	75.29
Zm00001d032051_P001	Maize	mitochondrion	23.44	66.67
CDX83966	Canola	plastid	59.38	66.67
HORVU2Hr1G079920.1	Barley	cytosol, mitochondrion, plastid	69.53	60.75
HORVU2Hr1G079910.1	Barley	cytosol	39.45	49.75
Zm00001d040012_P001	Maize	plastid	25.0	47.06
Zm00001d011218_P001	Maize	plastid	28.91	45.12
PGSC0003DMT400007514	Potato	plastid	35.94	35.38
PGSC0003DMT400050232	Potato	plastid	33.59	34.26
PGSC0003DMT400083158	Potato	plastid	33.2	34.0
PGSC0003DMT400059995	Potato	plastid	31.25	32.52
PGSC0003DMT400011381	Potato	plastid	33.59	32.33
PGSC0003DMT400060313	Potato	plastid	30.47	31.71
PGSC0003DMT400037285	Potato	extracellular, vacuole	18.36	30.13
PGSC0003DMT400021871	Potato	plastid	32.42	29.12
PGSC0003DMT400034896	Potato	plastid	30.08	28.84
PGSC0003DMT400020100	Potato	plastid	30.47	28.57
PGSC0003DMT400034899	Potato	plastid	29.69	28.46
PGSC0003DMT400043054	Potato	plastid	29.69	28.46
PGSC0003DMT400021391	Potato	plastid	28.91	28.46
PGSC0003DMT400021422	Potato	plastid	29.3	28.3
PGSC0003DMT400021389	Potato	plastid	29.3	28.3
PGSC0003DMT400092927	Potato	plastid	29.3	28.3
PGSC0003DMT400034897	Potato	plastid	28.91	28.24
PGSC0003DMT400034892	Potato	plastid	28.91	28.24
PGSC0003DMT400034898	Potato	plastid	28.91	28.24
PGSC0003DMT400034893	Potato	plastid	28.91	28.24
PGSC0003DMT400035006	Potato	cytosol, extracellular, vacuole	17.58	28.12
PGSC0003DMT400035007	Potato	cytosol, extracellular, vacuole	17.58	28.12
PGSC0003DMT400021390	Potato	plastid	28.52	28.08
PGSC0003DMT400021392	Potato	plastid	28.52	28.08
PGSC0003DMT400022072	Potato	plastid	28.91	27.92
PGSC0003DMT400049550	Potato	plastid	28.52	27.86
PGSC0003DMT400034902	Potato	plastid	14.06	27.48
PGSC0003DMT400054836	Potato	plastid	29.3	27.47
PGSC0003DMT400015740	Potato	plastid	26.95	26.04
PGSC0003DMT400010985	Potato	plastid	26.95	26.04
PGSC0003DMT400022698	Potato	plastid	29.69	24.92
PGSC0003DMT400068129	Potato	plastid	27.34	24.56
PGSC0003DMT400034894	Potato	plastid	18.36	24.1
PGSC0003DMT400025715	Potato	plastid	29.69	23.9
PGSC0003DMT400019031	Potato	plastid	30.08	23.48

Protein Annotations

MapMan:1.1.1.1.4	Gene3D:1.10.3460.10	EntrezGene:102586836	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538
InterPro:IPR023329	UniProt:M1AY19	PFAM:PF00504	EnsemblPlantsGene:PGSC0003DMG400012591	PGSC:PGSC0003DMG400012591	EnsemblPlants:PGSC0003DMT400032791
PANTHER:PTHR21649	PANTHER:PTHR21649:SF28	SUPFAM:SSF103511	TMHMM:TMhelix	UniParc:UPI000296D8A0	RefSeq:XP_006351799.1
SEG:seg	:	:	:	:	:

Description

Chlorophyll a-b binding protein CP24 10A, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400012591]

Coordinates

chr1:+:81784115..81785509

Molecular Weight (calculated)

27278.8 Da

IEP (calculated)

6.550

GRAVY (calculated)

0.118

Length

256 amino acids

Sequence
(BLAST)

001: MATTSAAVLN GLSSSFLTGG KKSQALLAAP LAARVGGAAT PKRFIVVAAA PKKSWLPGVR GGGNLVDPEW LDGSLPGDYG FDPLGLGKDP AFLKWYREAE
101: LIHGRWAMAA VLGIFVGQAW SGIPWFEAGA DPGAIAPFSF GTLLGTQLIL MGWVESKRWV DFFDPDSQSV EWATPWSKTA ENFANFTGEQ GYPGGKFFDP
201: LALAGTLNNG VYVPDTEKLE RLKVAEIKHA RLAMLAMLIF YFEAGQGKTP LGALGL

Best Arabidopsis Sequence Match ( AT1G15820.1 )
(BLAST)

001: MAMAVSGAVL SGLGSSFLTG GKRGATALAS GVGTGAQRVG RKTLIVAAAA AQPKKSWIPA VKGGGNFLDP EWLDGSLPGD FGFDPLGLGK DPAFLKWYRE
101: AELIHGRWAM AAVLGIFVGQ AWSGVAWFEA GAQPDAIAPF SFGSLLGTQL LLMGWVESKR WVDFFNPDSQ SVEWATPWSK TAENFANYTG DQGYPGGRFF
201: DPLGLAGKNR DGVYEPDFEK LERLKLAEIK HSRLAMVAML IFYFEAGQGK TPLGALGL

Arabidopsis Description

LHCB6Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q9LMQ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.