Factsheet for PGSC0003DMT400022072

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g011450.1.1	Tomato	plastid	99.25	99.25
PGSC0003DMT400049550	Potato	plastid	93.58	94.66
KRH22164	Soybean	nucleus, plastid	88.3	87.64
KRH27171	Soybean	mitochondrion, nucleus, plastid	88.3	87.31
OQU90095	Sorghum	plastid	88.3	87.31
Bra002999.1-P	Field mustard	plastid	87.17	87.17
VIT_00s0181g00180.t01	Wine grape	plastid	88.3	86.99
AT5G54270.1	Thale cress	plastid	86.79	86.79
Zm00001d021784_P001	Maize	plastid	87.92	86.62
VIT_00s0181g00200.t01	Wine grape	plastid	87.92	86.62
Os07t0562700-01	Rice	extracellular, plastid	85.66	85.34
TraesCS1B01G451100.1	Wheat	plastid	86.04	85.07
TraesCS1D01G428200.1	Wheat	plastid	86.04	85.07
TraesCS2A01G204800.1	Wheat	plastid	86.04	85.07
HORVU2Hr1G040780.7	Barley	plastid	84.91	82.72
PGSC0003DMT400035006	Potato	cytosol, extracellular, vacuole	46.79	77.5
PGSC0003DMT400035007	Potato	cytosol, extracellular, vacuole	46.79	77.5
CDY28778	Canola	plastid	73.58	76.17
PGSC0003DMT400021422	Potato	plastid	70.57	70.57
PGSC0003DMT400021392	Potato	plastid	69.06	70.38
PGSC0003DMT400021391	Potato	plastid	69.06	70.38
PGSC0003DMT400021390	Potato	plastid	69.06	70.38
PGSC0003DMT400092927	Potato	plastid	70.19	70.19
PGSC0003DMT400021389	Potato	plastid	70.19	70.19
PGSC0003DMT400034896	Potato	plastid	70.57	70.04
PGSC0003DMT400034899	Potato	plastid	70.19	69.66
PGSC0003DMT400015740	Potato	plastid	69.43	69.43
PGSC0003DMT400043054	Potato	plastid	69.81	69.29
PGSC0003DMT400034897	Potato	plastid	68.3	69.08
PGSC0003DMT400034892	Potato	plastid	68.3	69.08
PGSC0003DMT400010985	Potato	plastid	69.06	69.06
PGSC0003DMT400034898	Potato	plastid	67.55	68.32
PGSC0003DMT400034893	Potato	plastid	67.55	68.32
PGSC0003DMT400034894	Potato	plastid	49.06	66.67
PGSC0003DMT400022698	Potato	plastid	70.19	60.98
PGSC0003DMT400034902	Potato	plastid	29.06	58.78
Zm00001d006592_P001	Maize	plastid	26.42	56.91
PGSC0003DMT400019031	Potato	plastid	70.19	56.71
PGSC0003DMT400068129	Potato	plastid	44.91	41.75
PGSC0003DMT400037285	Potato	extracellular, vacuole	21.89	37.18
PGSC0003DMT400059995	Potato	plastid	32.83	35.37
PGSC0003DMT400060313	Potato	plastid	32.45	34.96
PGSC0003DMT400025715	Potato	plastid	40.75	33.96
PGSC0003DMT400054836	Potato	plastid	34.72	33.7
PGSC0003DMT400020100	Potato	plastid	34.34	33.33
PGSC0003DMT400083158	Potato	plastid	30.57	32.4
PGSC0003DMT400007514	Potato	plastid	31.7	32.31
PGSC0003DMT400050232	Potato	plastid	29.81	31.47
PGSC0003DMT400021871	Potato	plastid	33.21	30.88
PGSC0003DMT400032791	Potato	plastid	27.92	28.91
PGSC0003DMT400032790	Potato	plastid	27.55	28.52
PGSC0003DMT400011381	Potato	plastid	21.51	21.43

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	EntrezGene:102586284	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538
InterPro:IPR023329	UniProt:M1AG46	PFAM:PF00504	EnsemblPlantsGene:PGSC0003DMG400008564	PGSC:PGSC0003DMG400008564	EnsemblPlants:PGSC0003DMT400022072
PANTHER:PTHR21649	PANTHER:PTHR21649:SF11	SUPFAM:SSF103511	UniParc:UPI0002959583	RefSeq:XP_006349989.1	SEG:seg

Description

Chlorophyll a-b binding protein 13, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400008564]

Coordinates

chr12:-:1010684..1012186

Molecular Weight (calculated)

28636.3 Da

IEP (calculated)

4.875

GRAVY (calculated)

0.060

Length

265 amino acids

Sequence
(BLAST)

001: MASMAATASS TTVVRATPFL GQTKNANPLR DVVAMGSARF TMSNDLWYGP DRVKYLGPFS AQTPSYLNGE FPGDYGWDTA GLSADPEAFA KNRALEVIHG
101: RWAMLGALGC IFPEVLEKWV KVDFKEPVWF KAGAQIFSDG GLDYLGNPNL VHAQSILAVL GFQVVLMGLV EGFRINGLPG VGEGNDLYPG GQYFDPLGLA
201: DDPTTFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPLE NLLDHLDNPV ANNAWVYATK FVPGA

Best Arabidopsis Sequence Match ( AT5G54270.1 )
(BLAST)

001: MASTFTSSSS VLTPTTFLGQ TKASSFNPLR DVVSLGSPKY TMGNDLWYGP DRVKYLGPFS VQTPSYLTGE FPGDYGWDTA GLSADPEAFA KNRALEVIHG
101: RWAMLGAFGC ITPEVLQKWV RVDFKEPVWF KAGSQIFSEG GLDYLGNPNL VHAQSILAVL GFQVILMGLV EGFRINGLDG VGEGNDLYPG GQYFDPLGLA
201: DDPVTFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPLE NLLDHLDNPV ANNAWAFATK FAPGA

Arabidopsis Description

LHCB3Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S7M0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.