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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 10
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400035006 Potato cytosol, extracellular, vacuole 61.54 100.0
PGSC0003DMT400035007 Potato cytosol, extracellular, vacuole 61.54 100.0
PGSC0003DMT400092927 Potato plastid 100.0 98.11
PGSC0003DMT400021389 Potato plastid 99.62 97.74
PGSC0003DMT400021392 Potato plastid 97.69 97.69
Solyc02g071030.1.1 Tomato plastid 99.23 97.36
Solyc02g071010.1.1 Tomato plastid 99.23 97.36
Solyc02g070970.1.1 Tomato plastid 99.23 97.36
Solyc02g070950.1.1 Tomato plastid 99.23 97.36
Solyc02g070940.1.1 Tomato plastid 99.23 97.36
PGSC0003DMT400021391 Potato plastid 97.31 97.31
Solyc02g070990.1.1 Tomato plastid 98.85 96.98
Solyc02g070980.1.1 Tomato nucleus, plastid 98.85 96.98
PGSC0003DMT400021422 Potato plastid 98.46 96.6
TraesCSU01G086800.1 Wheat cytosol 36.15 95.92
PGSC0003DMT400034897 Potato plastid 96.15 95.42
PGSC0003DMT400034898 Potato plastid 95.38 94.66
PGSC0003DMT400034892 Potato plastid 95.38 94.66
PGSC0003DMT400034893 Potato plastid 94.23 93.51
PGSC0003DMT400043054 Potato plastid 95.38 92.88
PGSC0003DMT400034899 Potato plastid 95.38 92.88
KRH08634 Soybean endoplasmic reticulum 44.23 92.74
PGSC0003DMT400034896 Potato plastid 95.0 92.51
Solyc03g005770.1.1 Tomato nucleus 95.0 92.51
PGSC0003DMT400034894 Potato plastid 69.23 92.31
Solyc03g005760.1.1 Tomato nucleus 94.23 91.76
PGSC0003DMT400034902 Potato plastid 43.46 86.26
PGSC0003DMT400022698 Potato plastid 99.62 84.92
PGSC0003DMT400015740 Potato plastid 80.38 78.87
PGSC0003DMT400010985 Potato plastid 79.23 77.74
CDY17250 Canola mitochondrion, plastid 48.08 76.69
PGSC0003DMT400019031 Potato plastid 95.38 75.61
PGSC0003DMT400049550 Potato plastid 70.38 69.85
PGSC0003DMT400022072 Potato plastid 70.38 69.06
PGSC0003DMT400068129 Potato plastid 46.92 42.81
PGSC0003DMT400037285 Potato extracellular, vacuole 24.23 40.38
PGSC0003DMT400059995 Potato plastid 35.38 37.4
PGSC0003DMT400060313 Potato plastid 34.62 36.59
PGSC0003DMT400025715 Potato plastid 43.08 35.22
PGSC0003DMT400054836 Potato plastid 35.77 34.07
PGSC0003DMT400007514 Potato plastid 33.85 33.85
PGSC0003DMT400083158 Potato plastid 32.31 33.6
PGSC0003DMT400021871 Potato plastid 36.15 32.98
PGSC0003DMT400020100 Potato plastid 34.62 32.97
PGSC0003DMT400050232 Potato plastid 31.15 32.27
PGSC0003DMT400032791 Potato plastid 28.08 28.52
PGSC0003DMT400032790 Potato plastid 28.08 28.52
PGSC0003DMT400011381 Potato plastid 23.08 22.56
Protein Annotations
MapMan:1.1.1.1.1Gene3D:1.10.3460.10InterPro:Chloro_AB-bd_plnInterPro:Chloroa_b-bindInterPro:Chlorophyll_a/b-bd_dom_sfGO:GO:0003674
GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006091
GO:GO:0006464GO:GO:0008150GO:GO:0008152GO:GO:0009507GO:GO:0009522GO:GO:0009523
GO:GO:0009535GO:GO:0009536GO:GO:0009579GO:GO:0009765GO:GO:0009987GO:GO:0015979
GO:GO:0016020GO:GO:0016021GO:GO:0016168GO:GO:0018298GO:GO:0019538InterPro:IPR023329
UniProt:M1AF17PFAM:PF00504EnsemblPlantsGene:PGSC0003DMG400008299PGSC:PGSC0003DMG400008299EnsemblPlants:PGSC0003DMT400021390PANTHER:PTHR21649
PANTHER:PTHR21649:SF25SUPFAM:SSF103511UniParc:UPI0002969BE2SEG:seg::
Description
Chlorophyll a/b binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008299]
Coordinates
chr2:+:30124662..30125611
Molecular Weight (calculated)
27627.9 Da
IEP (calculated)
4.904
GRAVY (calculated)
0.042
Length
260 amino acids
Sequence
(BLAST)
001: MALSSPSFAG QAVKLSPSAS EITGNGRITM RKAVAKSAPS SSPWYGPDRV KYLGPFSGES PSYLTGEFPG DYGWDTAGLS ADPETFAKNR ELEVIHCRWA
101: MLGALGCVFP ELLARNGVKF GEAVWFKAGS QIFSEGGLDY LGNPSLVHAQ SILAIWACQV VLMGAVEGYR IAGGPLGEVV DPLYPGGSFD PLGLADDPEA
201: FAELKVKEIK NGRLAMFSMF GFFVQAIVTG KGPLENLADH LADPVNNNAW AFATNFVPGK
Best Arabidopsis Sequence Match ( AT2G34430.1 )
(BLAST)
001: MAASTMALSS PALTGKAVKL SPAASEVFGT GRITMRKASK PTGPSGSPWY GSDRVKYLGP FSGEPPSYLT GEFPGDYGWD TAGLSADPET FARNRELEVI
101: HSRWAMLGAL GCVFPELLAR NGVKFGEAVW FKAGSQIFSD GGLDYLGNPS LVHAQSILAI WATQVILMGA VEGYRVAGDG PLGEAEDLLY PGGSFDPLGL
201: ATDPEAFAEL KVKELKNGRL AMFSMFGFFV QAIVTGKGPL ENLADHLADP VNNNAWAFAT NFVPGK
Arabidopsis Description
LHB1B1Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q39142]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.