Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 10
- mitochondrion 1
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400035006 | Potato | cytosol, extracellular, vacuole | 61.54 | 100.0 |
PGSC0003DMT400035007 | Potato | cytosol, extracellular, vacuole | 61.54 | 100.0 |
PGSC0003DMT400092927 | Potato | plastid | 100.0 | 98.11 |
PGSC0003DMT400021389 | Potato | plastid | 99.62 | 97.74 |
PGSC0003DMT400021392 | Potato | plastid | 97.69 | 97.69 |
Solyc02g071030.1.1 | Tomato | plastid | 99.23 | 97.36 |
Solyc02g071010.1.1 | Tomato | plastid | 99.23 | 97.36 |
Solyc02g070970.1.1 | Tomato | plastid | 99.23 | 97.36 |
Solyc02g070950.1.1 | Tomato | plastid | 99.23 | 97.36 |
Solyc02g070940.1.1 | Tomato | plastid | 99.23 | 97.36 |
PGSC0003DMT400021391 | Potato | plastid | 97.31 | 97.31 |
Solyc02g070990.1.1 | Tomato | plastid | 98.85 | 96.98 |
Solyc02g070980.1.1 | Tomato | nucleus, plastid | 98.85 | 96.98 |
PGSC0003DMT400021422 | Potato | plastid | 98.46 | 96.6 |
TraesCSU01G086800.1 | Wheat | cytosol | 36.15 | 95.92 |
PGSC0003DMT400034897 | Potato | plastid | 96.15 | 95.42 |
PGSC0003DMT400034898 | Potato | plastid | 95.38 | 94.66 |
PGSC0003DMT400034892 | Potato | plastid | 95.38 | 94.66 |
PGSC0003DMT400034893 | Potato | plastid | 94.23 | 93.51 |
PGSC0003DMT400043054 | Potato | plastid | 95.38 | 92.88 |
PGSC0003DMT400034899 | Potato | plastid | 95.38 | 92.88 |
KRH08634 | Soybean | endoplasmic reticulum | 44.23 | 92.74 |
PGSC0003DMT400034896 | Potato | plastid | 95.0 | 92.51 |
Solyc03g005770.1.1 | Tomato | nucleus | 95.0 | 92.51 |
PGSC0003DMT400034894 | Potato | plastid | 69.23 | 92.31 |
Solyc03g005760.1.1 | Tomato | nucleus | 94.23 | 91.76 |
PGSC0003DMT400034902 | Potato | plastid | 43.46 | 86.26 |
PGSC0003DMT400022698 | Potato | plastid | 99.62 | 84.92 |
PGSC0003DMT400015740 | Potato | plastid | 80.38 | 78.87 |
PGSC0003DMT400010985 | Potato | plastid | 79.23 | 77.74 |
CDY17250 | Canola | mitochondrion, plastid | 48.08 | 76.69 |
PGSC0003DMT400019031 | Potato | plastid | 95.38 | 75.61 |
PGSC0003DMT400049550 | Potato | plastid | 70.38 | 69.85 |
PGSC0003DMT400022072 | Potato | plastid | 70.38 | 69.06 |
PGSC0003DMT400068129 | Potato | plastid | 46.92 | 42.81 |
PGSC0003DMT400037285 | Potato | extracellular, vacuole | 24.23 | 40.38 |
PGSC0003DMT400059995 | Potato | plastid | 35.38 | 37.4 |
PGSC0003DMT400060313 | Potato | plastid | 34.62 | 36.59 |
PGSC0003DMT400025715 | Potato | plastid | 43.08 | 35.22 |
PGSC0003DMT400054836 | Potato | plastid | 35.77 | 34.07 |
PGSC0003DMT400007514 | Potato | plastid | 33.85 | 33.85 |
PGSC0003DMT400083158 | Potato | plastid | 32.31 | 33.6 |
PGSC0003DMT400021871 | Potato | plastid | 36.15 | 32.98 |
PGSC0003DMT400020100 | Potato | plastid | 34.62 | 32.97 |
PGSC0003DMT400050232 | Potato | plastid | 31.15 | 32.27 |
PGSC0003DMT400032791 | Potato | plastid | 28.08 | 28.52 |
PGSC0003DMT400032790 | Potato | plastid | 28.08 | 28.52 |
PGSC0003DMT400011381 | Potato | plastid | 23.08 | 22.56 |
Protein Annotations
MapMan:1.1.1.1.1 | Gene3D:1.10.3460.10 | InterPro:Chloro_AB-bd_pln | InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf | GO:GO:0003674 |
GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006091 |
GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009522 | GO:GO:0009523 |
GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009765 | GO:GO:0009987 | GO:GO:0015979 |
GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016168 | GO:GO:0018298 | GO:GO:0019538 | InterPro:IPR023329 |
UniProt:M1AF17 | PFAM:PF00504 | EnsemblPlantsGene:PGSC0003DMG400008299 | PGSC:PGSC0003DMG400008299 | EnsemblPlants:PGSC0003DMT400021390 | PANTHER:PTHR21649 |
PANTHER:PTHR21649:SF25 | SUPFAM:SSF103511 | UniParc:UPI0002969BE2 | SEG:seg | : | : |
Description
Chlorophyll a/b binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008299]
Coordinates
chr2:+:30124662..30125611
Molecular Weight (calculated)
27627.9 Da
IEP (calculated)
4.904
GRAVY (calculated)
0.042
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MALSSPSFAG QAVKLSPSAS EITGNGRITM RKAVAKSAPS SSPWYGPDRV KYLGPFSGES PSYLTGEFPG DYGWDTAGLS ADPETFAKNR ELEVIHCRWA
101: MLGALGCVFP ELLARNGVKF GEAVWFKAGS QIFSEGGLDY LGNPSLVHAQ SILAIWACQV VLMGAVEGYR IAGGPLGEVV DPLYPGGSFD PLGLADDPEA
201: FAELKVKEIK NGRLAMFSMF GFFVQAIVTG KGPLENLADH LADPVNNNAW AFATNFVPGK
101: MLGALGCVFP ELLARNGVKF GEAVWFKAGS QIFSEGGLDY LGNPSLVHAQ SILAIWACQV VLMGAVEGYR IAGGPLGEVV DPLYPGGSFD PLGLADDPEA
201: FAELKVKEIK NGRLAMFSMF GFFVQAIVTG KGPLENLADH LADPVNNNAW AFATNFVPGK
001: MAASTMALSS PALTGKAVKL SPAASEVFGT GRITMRKASK PTGPSGSPWY GSDRVKYLGP FSGEPPSYLT GEFPGDYGWD TAGLSADPET FARNRELEVI
101: HSRWAMLGAL GCVFPELLAR NGVKFGEAVW FKAGSQIFSD GGLDYLGNPS LVHAQSILAI WATQVILMGA VEGYRVAGDG PLGEAEDLLY PGGSFDPLGL
201: ATDPEAFAEL KVKELKNGRL AMFSMFGFFV QAIVTGKGPL ENLADHLADP VNNNAWAFAT NFVPGK
101: HSRWAMLGAL GCVFPELLAR NGVKFGEAVW FKAGSQIFSD GGLDYLGNPS LVHAQSILAI WATQVILMGA VEGYRVAGDG PLGEAEDLLY PGGSFDPLGL
201: ATDPEAFAEL KVKELKNGRL AMFSMFGFFV QAIVTGKGPL ENLADHLADP VNNNAWAFAT NFVPGK
Arabidopsis Description
LHB1B1Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q39142]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.