CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

nucleus 1
plastid 10

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43915	Soybean	mitochondrion, nucleus, plastid	98.85	98.47
CDX83967	Canola	extracellular, vacuole	8.46	95.65
KRH58296	Soybean	plastid	83.85	89.71
VIT_12s0055g01110.t01	Wine grape	plastid	88.46	89.49
PGSC0003DMT400032791	Potato	plastid	86.15	87.5
KRH42185	Soybean	mitochondrion, nucleus, plastid	86.54	87.21
Solyc01g105030.2.1	Tomato	plastid	84.62	85.94
GSMUA_Achr10P...	Banana	unclear	49.23	85.91
CDX81735	Canola	plastid	83.08	83.4
Bra026099.1-P	Field mustard	plastid	82.69	83.33
CDY33376	Canola	plastid	82.69	83.33
CDY35042	Canola	plastid	82.69	83.33
PGSC0003DMT400032790	Potato	plastid	81.92	83.2
CDY52865	Canola	plastid	82.31	82.63
Bra026745.1-P	Field mustard	plastid	82.31	82.63
AT1G15820.1	Thale cress	plastid	81.15	81.78
Solyc01g105050.2.1	Tomato	plastid	80.38	81.64
Zm00001d026599_P001	Maize	plastid	77.69	81.45
CDX96833	Canola	plastid	80.38	80.69
Bra016650.1-P	Field mustard	plastid	79.62	80.54
OQU82564	Sorghum	plastid	77.69	79.22
Zm00001d001857_P001	Maize	plastid	76.15	78.26
Os04t0457000-01	Rice	extracellular, plasma membrane, plastid	75.38	77.78
TraesCS2B01G340300.1	Wheat	plastid	75.77	77.25
TraesCS2A01G342600.1	Wheat	plastid	75.77	77.25
TraesCS2D01G320900.1	Wheat	plastid	75.77	77.25
Zm00001d032051_P001	Maize	mitochondrion	23.85	68.89
CDX83966	Canola	plastid	60.38	68.86
HORVU2Hr1G079920.1	Barley	cytosol, mitochondrion, plastid	70.0	62.12
HORVU2Hr1G079910.1	Barley	cytosol	39.62	50.74
Zm00001d040012_P001	Maize	plastid	24.62	47.06
Zm00001d011218_P001	Maize	plastid	27.69	43.9
KRH37524	Soybean	plastid	35.38	35.38
KRH12566	Soybean	plastid	35.38	35.38
KRH54568	Soybean	nucleus, plastid	32.31	33.33
KRH63318	Soybean	plastid	31.92	32.94
KRH51989	Soybean	nucleus	35.38	32.28
KRH06319	Soybean	nucleus, plastid	31.54	30.37
KRH08384	Soybean	nucleus, plastid	28.46	30.08
KRG97750	Soybean	plastid	31.92	29.86
KRH70044	Soybean	mitochondrion, nucleus, plastid	28.08	29.67
KRH31130	Soybean	nucleus, plastid	31.54	29.08
KRH75874	Soybean	mitochondrion, nucleus, plastid	32.31	28.97
KRH08672	Soybean	mitochondrion, nucleus, plastid	29.23	28.79
KRH08676	Soybean	nucleus, plastid	29.23	28.79
KRH08669	Soybean	nucleus, plastid	29.23	28.79
KRH65776	Soybean	nucleus, plastid	31.92	28.62
KRH42317	Soybean	mitochondrion, nucleus, plastid	28.85	28.52
KRH47742	Soybean	nucleus	30.77	28.37
KRH61286	Soybean	mitochondrion	23.85	28.31
KRH14048	Soybean	nucleus, plastid	30.0	28.26
KRH74072	Soybean	mitochondrion, nucleus, plastid	30.0	28.26
KRH08634	Soybean	endoplasmic reticulum	13.46	28.23
KRH22164	Soybean	nucleus, plastid	28.85	28.09
KRH27171	Soybean	mitochondrion, nucleus, plastid	28.85	27.99
KRH58441	Soybean	mitochondrion, plastid	28.08	27.76
KRH68993	Soybean	plastid	31.92	26.95
KRH70280	Soybean	plastid	25.77	26.91
KRH14122	Soybean	nucleus, plastid	24.62	24.15
KRH34336	Soybean	plastid	26.54	24.04
KRG92462	Soybean	nucleus, plastid	26.54	23.96
KRH09238	Soybean	mitochondrion, nucleus, plastid	26.54	23.88
KRH74003	Soybean	nucleus, plastid	24.23	23.77
KRH38736	Soybean	nucleus, plastid	26.54	23.71
KRH06016	Soybean	plastid	28.08	21.99
KRH17548	Soybean	cytosol, peroxisome, plastid	16.15	20.79
KRH58809	Soybean	mitochondrion	18.08	14.83

Protein Annotations

MapMan:1.1.1.1.4	Gene3D:1.10.3460.10	EMBL:ACUP02009147	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
EnsemblPlantsGene:GLYMA_15G052400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009416
GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009628	GO:GO:0009765	GO:GO:0009768	GO:GO:0009941	GO:GO:0009987	GO:GO:0010287
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538
GO:GO:0031409	InterPro:IPR023329	UniProt:K7M9Q3	ProteinID:KRH10514.1	EnsemblPlants:KRH10515	ProteinID:KRH10515
ProteinID:KRH10515.1	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF28	SUPFAM:SSF103511	UniParc:UPI00023D1BD5
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:+:4132856..4135122

Molecular Weight (calculated)

27661.2 Da

IEP (calculated)

6.550

GRAVY (calculated)

0.105

Length

260 amino acids

Sequence
(BLAST)

001: MAAATSGAVL NGLGSSFLSG GNRSQTLLAT AIGGKVGAAV TVNPRRLIVV AAAAPKKSWL PGVRGGGNLV DPEWLDGSLP GDYGFDPLGL GKDPAFLKWY
101: REAELIHGRW AMAAVLGIFV GQAWSGVPWF EAGADPNAIA PFSFGTLLGT QLILMGWVES KRWVDFFNPD SQSVEWATPW SRTAENFANA TGEQGYPGGK
201: FFDPLSFAGT IKDGVYIPDT EKLERLKLAE IKHARIAMLA MLIFYFEAGQ GKTPLGALGL

Best Arabidopsis Sequence Match ( AT1G15820.1 )
(BLAST)

001: MAMAVSGAVL SGLGSSFLTG GKRGATALAS GVGTGAQRVG RKTLIVAAAA AQPKKSWIPA VKGGGNFLDP EWLDGSLPGD FGFDPLGLGK DPAFLKWYRE
101: AELIHGRWAM AAVLGIFVGQ AWSGVAWFEA GAQPDAIAPF SFGSLLGTQL LLMGWVESKR WVDFFNPDSQ SVEWATPWSK TAENFANYTG DQGYPGGRFF
201: DPLGLAGKNR DGVYEPDFEK LERLKLAEIK HSRLAMVAML IFYFEAGQGK TPLGALGL

Arabidopsis Description

LHCB6Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q9LMQ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.