Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plastid, plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G094300.1 | Wheat | plastid | 78.59 | 96.62 |
| TraesCS6A01G094100.1 | Wheat | plastid | 78.29 | 96.24 |
| TraesCS6A01G093700.1 | Wheat | plastid | 77.98 | 95.86 |
| TraesCS6A01G094600.1 | Wheat | plastid | 74.92 | 95.7 |
| TraesCS7A01G238400.1 | Wheat | plastid | 77.68 | 95.49 |
| TraesCS5A01G454200.1 | Wheat | plastid | 77.37 | 95.11 |
| TraesCS1A01G403300.1 | Wheat | plastid | 77.37 | 95.11 |
| TraesCS1A01G403800.1 | Wheat | plastid | 77.06 | 94.74 |
| TraesCS6B01G122600.1 | Wheat | plastid | 77.06 | 94.74 |
| TraesCS5A01G454300.1 | Wheat | plastid | 76.76 | 94.36 |
| GSMUA_Achr5P09230_001 | Banana | cytosol, extracellular, plastid | 38.23 | 93.98 |
| TraesCS5A01G454400.1 | Wheat | mitochondrion, plastid | 47.71 | 93.41 |
| HORVU1Hr1G088920.3 | Barley | plastid | 83.79 | 92.57 |
| TraesCS7A01G237100.1 | Wheat | plastid | 74.62 | 91.73 |
| TraesCS7A01G276400.1 | Wheat | plastid | 72.17 | 90.77 |
| TraesCS1A01G306600.1 | Wheat | plastid | 73.39 | 90.57 |
| Os01t0720500-01 | Rice | plastid | 73.09 | 90.19 |
| TraesCS5A01G350600.1 | Wheat | plastid | 72.48 | 89.43 |
| VIT_19s0014g00160.t01 | Wine grape | plastid | 71.87 | 88.02 |
| TraesCS6A01G094500.1 | Wheat | plastid | 81.96 | 87.87 |
| GSMUA_Achr2P09300_001 | Banana | plasma membrane, plastid, unclear | 71.56 | 87.64 |
| VIT_10s0003g02900.t01 | Wine grape | plastid | 70.34 | 87.12 |
| VIT_10s0003g02890.t01 | Wine grape | plastid | 70.34 | 87.12 |
| VIT_12s0028g00320.t01 | Wine grape | plastid | 70.34 | 85.19 |
| VIT_07s0005g02220.t01 | Wine grape | plastid | 68.2 | 84.79 |
| PGSC0003DMT400034902 | Potato | plastid | 33.64 | 83.97 |
| TraesCS6A01G094400.1 | Wheat | plastid | 84.71 | 83.18 |
| GSMUA_Achr4P07890_001 | Banana | plastid | 39.45 | 81.13 |
| TraesCS5A01G322500.1 | Wheat | plastid | 59.94 | 74.52 |
| TraesCS2A01G204800.1 | Wheat | plastid | 54.43 | 66.42 |
| TraesCS4A01G226900.2 | Wheat | mitochondrion, plastid | 35.78 | 40.62 |
| TraesCS7A01G227100.1 | Wheat | plastid | 28.13 | 37.25 |
| TraesCS5A01G177700.1 | Wheat | plastid | 34.56 | 36.45 |
| TraesCS6A01G319700.1 | Wheat | plastid | 27.52 | 35.43 |
| TraesCS2A01G187200.1 | Wheat | plastid | 27.22 | 34.63 |
| TraesCS5A01G213000.1 | Wheat | plastid | 26.91 | 32.23 |
| TraesCS2A01G206200.1 | Wheat | plastid | 26.91 | 30.77 |
| TraesCS6A01G159800.1 | Wheat | plastid | 25.08 | 30.48 |
| TraesCS5A01G229300.1 | Wheat | mitochondrion, plastid | 22.63 | 30.2 |
| TraesCS2A01G342600.1 | Wheat | plastid | 23.24 | 29.8 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G094200.1 | EnsemblPlantsGene:TraesCS6A01G094200 | Gene3D:1.10.3460.10 | GO:GO:0005575 | GO:GO:0006091 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009765 | GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016020 | InterPro:Chloro_AB-bd_pln |
| InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf | InterPro:IPR023329 | PANTHER:PTHR21649 | PANTHER:PTHR21649:SF56 | PFAM:PF00504 |
| SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF103511 | MapMan:1.1.1.1.1 | : | : |
Description
No Description!
Coordinates
chr6A:+:61408561..61409544
Molecular Weight (calculated)
35117.3 Da
IEP (calculated)
7.234
GRAVY (calculated)
0.138
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKLQIFLP IHLYLVSLYT KSMPCATSVA ISSHLRSHIK ASPHSLIPWR IHTVDNLLSL PMATTTMSLS SSTFASKAVK NVSSSALFGE ARVTMRKTAA
101: KAKQVSSGSP WYGADRVLYL GPLSGEPPSY LTGEFPGDYG WDTAGLSADP ETFSKNRELE VIHCRWAMLG ALGCVFPELL ARNGVKFGEA VWFKAGSQIF
201: SEGGLDYLGN PSLVHAQSIL AIWACQVVLM GAVEGYRVAG GPLGEIVDPL YPGGSFDPLG LADDPEAFAE LKVKEIKNGR LAMFSMFGFF VQAIVTGKGP
301: LENLADHIAD PVNNNAWAFA TNFVPGK
101: KAKQVSSGSP WYGADRVLYL GPLSGEPPSY LTGEFPGDYG WDTAGLSADP ETFSKNRELE VIHCRWAMLG ALGCVFPELL ARNGVKFGEA VWFKAGSQIF
201: SEGGLDYLGN PSLVHAQSIL AIWACQVVLM GAVEGYRVAG GPLGEIVDPL YPGGSFDPLG LADDPEAFAE LKVKEIKNGR LAMFSMFGFF VQAIVTGKGP
301: LENLADHIAD PVNNNAWAFA TNFVPGK
001: MAASTMALSS PAFAGKAVNL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK
Arabidopsis Description
LHCB1.1Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ87]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.