CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90755	Canola	plastid	96.44	96.79
CDY05098	Canola	plastid	96.09	96.43
CDX86864	Canola	plastid	71.53	96.17
GSMUA_Achr6P12670_001	Banana	plasma membrane	81.49	82.08
PGSC0003DMT400068129	Potato	plastid	82.56	81.4
Solyc06g063370.2.1	Tomato	plastid	82.56	81.12
Os11t0242800-01	Rice	plastid	79.72	79.15
GSMUA_Achr3P02780_001	Banana	plastid	81.49	78.97
TraesCS4D01G086400.1	Wheat	plastid	80.07	78.67
TraesCS4B01G089500.1	Wheat	mitochondrion, plastid	80.07	78.67
TraesCS4A01G226900.2	Wheat	mitochondrion, plastid	80.07	78.12
Zm00001d048998_P001	Maize	plastid	78.29	77.74
EES09551	Sorghum	plastid	77.94	77.66
Zm00001d007267_P002	Maize	plastid	77.94	77.39
GSMUA_Achr10P...	Banana	plastid	77.94	76.04
HORVU4Hr1G015260.2	Barley	plastid	70.82	69.1
VIT_18s0089g01170.t01	Wine grape	cytosol, extracellular, plastid	86.12	60.2
CDY66572	Canola	cytosol, extracellular, plastid	24.91	48.95
CDY30369	Canola	plastid	24.56	45.39
CDY52238	Canola	plastid	35.59	42.73
CDY17250	Canola	mitochondrion, plastid	24.56	42.33
CDY14320	Canola	plastid	35.23	42.31
CDY18320	Canola	plastid	35.23	42.31
KRH58809	Soybean	mitochondrion	47.69	42.27
CDX84647	Canola	plastid	39.5	41.73
CDX84316	Canola	plastid	39.5	41.73
CDY17247	Canola	plastid	39.5	41.73
CDX79562	Canola	plastid	39.5	41.73
CDY17248	Canola	plastid	39.15	41.35
CDY26306	Canola	plastid	39.15	41.2
CDY66768	Canola	plastid	39.15	41.2
CDY43676	Canola	plastid	39.15	41.2
CDY35271	Canola	plastid	39.15	41.2
CDY43198	Canola	plastid	39.15	41.2
CDX90218	Canola	plastid	39.15	41.2
CDX98158	Canola	plastid	39.15	41.2
CDX99866	Canola	plastid	39.15	41.2
CDY15050	Canola	plastid	38.43	40.75
CDX93077	Canola	plastid	38.43	40.75
CDX83726	Canola	plastid	38.08	40.23
CDY20039	Canola	plastid	37.72	40.0
CDY13732	Canola	plastid	37.72	39.85
CDY49770	Canola	plastid	37.72	39.85
CDY00149	Canola	plastid	37.72	39.85
CDY03989	Canola	plastid	37.72	39.85
CDX83967	Canola	extracellular, vacuole	3.2	39.13
CDX99044	Canola	plastid	30.96	34.52
CDY47410	Canola	plastid	30.96	34.52
CDX84315	Canola	plastid	39.86	34.04
CDY28778	Canola	plastid	30.96	33.98
CDY26347	Canola	plastid	30.61	33.73
CDX73435	Canola	plastid	28.83	33.61
CDX67613	Canola	plastid	28.83	33.61
CDX78277	Canola	plastid	28.83	33.61
CDY07517	Canola	plastid	28.83	33.61
CDY12903	Canola	plastid	32.38	33.58
CDY57375	Canola	plastid	32.03	33.21
CDY15020	Canola	plastid	32.03	33.21
CDY43936	Canola	plastid	30.25	33.2
CDY45980	Canola	plastid	38.08	33.02
CDY47581	Canola	plastid	32.03	32.97
CDY03835	Canola	plastid	32.03	32.97
CDY43213	Canola	mitochondrion, plastid	30.25	32.95
CDY51572	Canola	plastid	30.25	32.82
CDX89120	Canola	plastid	29.89	32.81
CDY20401	Canola	plastid	38.08	32.72
CDY17055	Canola	mitochondrion, plastid	29.89	32.56
CDX83783	Canola	plastid	28.47	30.08
CDY44667	Canola	plastid	30.61	29.86
CDX96677	Canola	plastid	28.11	29.7
CDY04834	Canola	plastid	30.25	29.62
CDY53084	Canola	plastid	30.25	29.41
CDX74808	Canola	plastid	28.47	28.99
CDY20518	Canola	plastid	28.11	28.62
CDY35042	Canola	plastid	24.56	26.74
CDY52865	Canola	plastid	24.56	26.64
CDX96833	Canola	plastid	24.56	26.64
CDX81735	Canola	plastid	24.56	26.64
CDY33376	Canola	plastid	24.2	26.36
CDX83966	Canola	plastid	21.0	25.88
CDY61708	Canola	plastid	22.42	18.0

Protein Annotations

MapMan:1.1.1.1.3	Gene3D:1.10.3460.10	GO:A0A078J8I6	UniProt:A0A078J8I6	EnsemblPlants:CDY60092	ProteinID:CDY60092
ProteinID:CDY60092.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00028150001	InterPro:IPR023329
PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF53	SUPFAM:SSF103511	UniParc:UPI0004EE0F2A	SEG:seg

Description

BnaC02g46810DChlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A078J8I6]

Coordinates

chrLK033840:+:27274..28938

Molecular Weight (calculated)

30309.5 Da

IEP (calculated)

6.805

GRAVY (calculated)

-0.030

Length

281 amino acids

Sequence
(BLAST)

001: MASLGVSEML ATPLNFRAVS RSSAPLASNP ATFKTVALFS KKKPAPPPKA KTVSAANDEL AKWYGPDRRI FLPDGLLDRS EIPEYLNGEV AGDYGYDPFG
101: LGKKPENFAK YQAFELIHAR WAMLGAAGFI IPEAFNKYGA NCGPEAVWFK TGALLLDGNT LNYFGKNIPI NLVLAVVAEV VLLGGAEYYR ITNGLDFEDK
201: LHPGGPFDPL GLAKDPEQGA LLKVKEIKNG RLAMFAMLGF FIQAYVTGEG PVENLSKHLS DPFGNNLLTV IAGTAERAPT L

Best Arabidopsis Sequence Match ( AT4G10340.1 )
(BLAST)

001: MASLGVSEML GTPLNFRAVS RSSAPLASSP STFKTVALFS KKKPAPAKSK AVSETSDELA KWYGPDRRIF LPDGLLDRSE IPEYLNGEVA GDYGYDPFGL
101: GKKPENFAKY QAFELIHARW AMLGAAGFII PEALNKYGAN CGPEAVWFKT GALLLDGNTL NYFGKNIPIN LVLAVVAEVV LLGGAEYYRI TNGLDFEDKL
201: HPGGPFDPLG LAKDPEQGAL LKVKEIKNGR LAMFAMLGFF IQAYVTGEGP VENLAKHLSD PFGNNLLTVI AGTAERAPTL

Arabidopsis Description

LHCB5Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178UW55]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.