Factsheet for VIT_06s0004g08150.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane

Predictor Summary:

cytosol 1
plastid 1
extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g00540.t01
VIT_01s0137g00510.t01
VIT_01s0137g00540.t01
VIT_01s0137g00550.t01
VIT_01s0137g00560.t01
VIT_02s0025g00590.t01
VIT_02s0025g00640.t01
VIT_03s0038g02330.t01
VIT_06s0004g08150.t01	endoplasmic reticulum
VIT_06s0080g00310.t01
VIT_07s0031g02730.t01
VIT_08s0007g06170.t01
VIT_15s0046g01760.t01
VIT_15s0048g00220.t01
VIT_16s0098g01230.t01
VIT_16s0100g01280.t01
VIT_17s0000g07580.t01
VIT_18s0001g00810.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30490.1	VIT_18s0001g00810.t01	AT1G20330.1	23175744
AT2G30490.1	VIT_08s0007g06170.t01	AT1G51570.1	23175744
AT2G30490.1	VIT_02s0025g00640.t01	AT1G64090.2	23175744
AT2G30490.1	VIT_07s0031g02730.t01	AT1G64090.2	23175744
AT2G30490.1	VIT_15s0046g01760.t01	AT1G64090.2	23175744
AT2G30490.1	VIT_01s0011g00540.t01	AT2G03510.1	23175744
AT2G30490.1	VIT_03s0038g02330.t01	AT2G20990.3	23175744
AT2G30490.1	VIT_06s0004g08150.t01	AT2G30490.1	23175744
AT2G30490.1	VIT_06s0004g08150.t01	AT2G30490.1	23175744
AT2G30490.1	VIT_15s0048g00220.t01	AT2G45140.1	23175744
AT2G30490.1	VIT_02s0025g00590.t01	AT2G46170.1	23175744
AT2G30490.1	VIT_01s0137g00510.t01	AT3G26830.1	23175744
AT2G30490.1	VIT_01s0137g00540.t01	AT3G26830.1	23175744
AT2G30490.1	VIT_01s0137g00550.t01	AT3G26830.1	23175744
AT2G30490.1	VIT_01s0137g00560.t01	AT3G26830.1	23175744
AT2G30490.1	VIT_17s0000g07580.t01	AT3G48100.1	18642946
AT2G30490.1	VIT_16s0100g01280.t01	AT3G48890.1	23175744
AT2G30490.1	VIT_06s0080g00310.t01	AT5G22460.1	23175744
AT2G30490.1	VIT_02s0025g00640.t01	AT5G41600.1	23175744
AT2G30490.1	VIT_07s0031g02730.t01	AT5G41600.1	23175744
AT2G30490.1	VIT_15s0046g01760.t01	AT5G41600.1	23175744
AT2G30490.1	VIT_16s0098g01230.t01	AT5G53560.1	23175744

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078288	Potato	cytosol	55.84	88.12
PGSC0003DMT400078290	Potato	endoplasmic reticulum, golgi	85.94	85.94
KRH72830	Soybean	endoplasmic reticulum	84.55	84.39
Bra018311.1-P	Field mustard	extracellular, golgi, plasma membrane	84.16	84.16
CDY10741	Canola	extracellular, golgi, plasma membrane	84.16	84.16
CDY02068	Canola	extracellular, golgi, plasma membrane	83.96	83.96
KRH17200	Soybean	endoplasmic reticulum	83.96	83.96
AT2G30490.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	83.76	83.76
CDY29670	Canola	extracellular, golgi, plasma membrane	83.76	83.76
CDX97826	Canola	extracellular, golgi, plasma membrane	83.56	83.56
Bra021637.1-P	Field mustard	extracellular, golgi, plasma membrane	83.37	83.37
CDX84829	Canola	extracellular, golgi, plasma membrane	83.17	83.17
CDY23995	Canola	extracellular, golgi, plasma membrane	82.97	82.97
Bra022803.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	82.77	82.77
EES03803	Sorghum	endoplasmic reticulum, golgi	82.77	82.77
Zm00001d012510_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	61.98	81.51
HORVU3Hr1G080830.1	Barley	endoplasmic reticulum	80.2	80.2
CDY23996	Canola	endoplasmic reticulum, extracellular, plasma membrane	75.64	79.42
CDX84830	Canola	endoplasmic reticulum, golgi, plasma membrane	79.01	79.32
TraesCS3A01G342900.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	79.21	79.05
TraesCS3B01G375100.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	79.21	79.05
Bra022802.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	78.61	78.93
TraesCS3D01G336900.2	Wheat	endoplasmic reticulum	79.01	78.85
Bra021636.1-P	Field mustard	extracellular, golgi, plasma membrane	77.23	77.23
CDY29671	Canola	extracellular, golgi, plasma membrane	77.03	77.03
CDX97827	Canola	endoplasmic reticulum, golgi, plasma membrane	77.03	77.03
TraesCS2D01G300200.1	Wheat	endoplasmic reticulum	71.68	71.54
TraesCS2B01G317700.1	Wheat	endoplasmic reticulum, golgi	42.77	66.87
VIT_11s0078g00290.t01	Wine grape	plasma membrane	62.97	59.55
VIT_11s0065g00350.t01	Wine grape	plasma membrane	62.38	59.21
Os01t0820000-00	Rice	plasma membrane	28.51	43.24

Protein Annotations

Gene3D:1.10.630.10	EntrezGene:100253493	wikigene:100253493	MapMan:9.2.1.2	UniProt:A5BRL4	EMBL:AM468511
ProteinID:CAN77208	ProteinID:CAN77208.1	ProteinID:CCB43396	ProteinID:CCB43396.1	InterPro:Cyt_P450	InterPro:Cyt_P450_CS
InterPro:Cyt_P450_E_grp-I	InterPro:Cyt_P450_sf	EMBL:FN594951	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497
GO:GO:0005488	GO:GO:0005506	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009808	GO:GO:0009987	GO:GO:0016020	GO:GO:0016491	GO:GO:0016705	GO:GO:0016710
GO:GO:0019748	GO:GO:0020037	GO:GO:0044550	GO:GO:0046872	GO:GO:0055114	InterPro:IPR036396
EntrezGene:LOC100253493	wikigene:LOC100253493	PFAM:PF00067	PRINTS:PR00385	PRINTS:PR00463	ScanProsite:PS00086
PANTHER:PTHR24298	PANTHER:PTHR24298:SF56	SUPFAM:SSF48264	TIGR:TC70715	TMHMM:TMhelix	UniParc:UPI00015216F9
ArrayExpress:VIT_06s0004g08150	EnsemblPlantsGene:VIT_06s0004g08150	EnsemblPlants:VIT_06s0004g08150.t01	unigene:Vvi.6228	RefSeq:XP_002266238	RefSeq:XP_002266238.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:8882451..8885910

Molecular Weight (calculated)

57688.6 Da

IEP (calculated)

9.440

GRAVY (calculated)

-0.188

Length

505 amino acids

Sequence
(BLAST)

001: MDLILIEKAL LAVFCAIILA ITISKLLGKK LKLPPGPLPV PVFGNWLQVG DDLNHLNLSD LAKKFGDIFM LRMGQRNLVV VSSPDLAKDV LHTQGVEFGS
101: RTRNVVFDIF TGKGQDMVFT VYGEHWRKMR RIMTVPFFTN KVVQQYRVGW EDEAARVVED VKKNPEASTN GIVLRRRLQL MMYNNMYRIM FDRRFDSEED
201: PLFVKLKALN GERSRLAQSF EYNYGDFIPI LRPFLRGYLK ICKEVKERRL QLFKDHFLEE RKKLASTKST DHNSLKCAVD HILDAQQKGE INEDNVLYIV
301: ENINVAAIET TLWSIEWGIA ELVNHPHIQK KLRDELNTVL GPGVQVTEPD IQKLPYLQAV IKETLRLRMA IPLLVPHMNL NDAKLGGYDI PAESKILVNA
401: WWLANDSSKW KKPEEFRPER FLEEESKVEA NGNDFRYLPF GVGRRSCPGI ILALPILGIT IGRLVQNFEL LPPPGQAKLD TTGKGGQFSL HILKHSTIVA
501: RPIEA

Best Arabidopsis Sequence Match ( AT2G30490.1 )
(BLAST)

001: MDLLLLEKSL IAVFVAVILA TVISKLRGKK LKLPPGPIPI PIFGNWLQVG DDLNHRNLVD YAKKFGDLFL LRMGQRNLVV VSSPDLTKEV LLTQGVEFGS
101: RTRNVVFDIF TGKGQDMVFT VYGEHWRKMR RIMTVPFFTN KVVQQNREGW EFEAASVVED VKKNPDSATK GIVLRKRLQL MMYNNMFRIM FDRRFESEDD
201: PLFLRLKALN GERSRLAQSF EYNYGDFIPI LRPFLRGYLK ICQDVKDRRI ALFKKYFVDE RKQIASSKPT GSEGLKCAID HILEAEQKGE INEDNVLYIV
301: ENINVAAIET TLWSIEWGIA ELVNHPEIQS KLRNELDTVL GPGVQVTEPD LHKLPYLQAV VKETLRLRMA IPLLVPHMNL HDAKLAGYDI PAESKILVNA
401: WWLANNPNSW KKPEEFRPER FFEEESHVEA NGNDFRYVPF GVGRRSCPGI ILALPILGIT IGRMVQNFEL LPPPGQSKVD TSEKGGQFSL HILNHSIIVM
501: KPRNC

Arabidopsis Description

CYP73A5Cinnamate-4-hydroxylase [Source:UniProtKB/TrEMBL;Acc:B1GV49]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.