CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 6
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71001
CDX79993
CDX81995
CDX83400
CDX84829	endoplasmic reticulum
CDX84830	endoplasmic reticulum
CDX88793
CDX92349
CDX95631
CDX96233
CDX97826	endoplasmic reticulum
CDX97827	endoplasmic reticulum
CDY00522
CDY02068	endoplasmic reticulum
CDY04155
CDY05880
CDY08353
CDY09141
CDY10741	endoplasmic reticulum
CDY13846
CDY14370
CDY20247
CDY21085
CDY21807
CDY23995	endoplasmic reticulum
CDY23996	endoplasmic reticulum
CDY25557
CDY26931
CDY27392
CDY28830
CDY29670	endoplasmic reticulum
CDY29671	endoplasmic reticulum
CDY34396
CDY34589
CDY35686
CDY36905
CDY37029
CDY38194
CDY42012
CDY45557
CDY51340
CDY54257
CDY56247
CDY57247
CDY59856
CDY61583
CDY65417
CDY68104
CDY68129
CDY70164
CDY71101
CDY71885

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30490.1	CDY51340	AT1G20330.1	23175744
AT2G30490.1	CDY71885	AT1G20330.1	23175744
AT2G30490.1	CDY08353	AT1G64090.2	23175744
AT2G30490.1	CDY25557	AT1G64090.2	23175744
AT2G30490.1	CDY34396	AT1G64090.2	23175744
AT2G30490.1	CDY38194	AT1G64090.2	23175744
AT2G30490.1	CDY04155	AT2G03510.1	23175744
AT2G30490.1	CDY45557	AT2G03510.1	23175744
AT2G30490.1	CDY65417	AT2G03510.1	23175744
AT2G30490.1	CDX81995	AT2G20990.3	23175744
AT2G30490.1	CDY13846	AT2G20990.3	23175744
AT2G30490.1	CDX84829	AT2G30490.1	23175744
AT2G30490.1	CDX84830	AT2G30490.1	23175744
AT2G30490.1	CDX97826	AT2G30490.1	23175744
AT2G30490.1	CDX97827	AT2G30490.1	23175744
AT2G30490.1	CDY02068	AT2G30490.1	23175744
AT2G30490.1	CDY10741	AT2G30490.1	23175744
AT2G30490.1	CDY23995	AT2G30490.1	23175744
AT2G30490.1	CDY23996	AT2G30490.1	23175744
AT2G30490.1	CDY29670	AT2G30490.1	23175744
AT2G30490.1	CDY29671	AT2G30490.1	23175744
AT2G30490.1	CDX84829	AT2G30490.1	23175744
AT2G30490.1	CDX84830	AT2G30490.1	23175744
AT2G30490.1	CDX97826	AT2G30490.1	23175744
AT2G30490.1	CDX97827	AT2G30490.1	23175744
AT2G30490.1	CDY02068	AT2G30490.1	23175744
AT2G30490.1	CDY10741	AT2G30490.1	23175744
AT2G30490.1	CDY23995	AT2G30490.1	23175744
AT2G30490.1	CDY23996	AT2G30490.1	23175744
AT2G30490.1	CDY29670	AT2G30490.1	23175744
AT2G30490.1	CDY29671	AT2G30490.1	23175744
AT2G30490.1	CDX83400	AT2G45140.1	23175744
AT2G30490.1	CDX95631	AT2G45140.1	23175744
AT2G30490.1	CDY27392	AT2G45140.1	23175744
AT2G30490.1	CDY37029	AT2G45140.1	23175744
AT2G30490.1	CDY56247	AT2G45140.1	23175744
AT2G30490.1	CDY57247	AT2G45140.1	23175744
AT2G30490.1	CDX79993	AT2G46170.1	23175744
AT2G30490.1	CDY42012	AT2G46170.1	23175744
AT2G30490.1	CDY21085	AT3G26830.1	23175744
AT2G30490.1	CDY34589	AT3G26830.1	23175744
AT2G30490.1	CDY21807	AT3G48100.1	18642946
AT2G30490.1	CDY36905	AT3G48100.1	18642946
AT2G30490.1	CDY54257	AT3G48100.1	18642946
AT2G30490.1	CDY59856	AT3G48100.1	18642946
AT2G30490.1	CDY68129	AT3G48100.1	18642946
AT2G30490.1	CDY70164	AT3G48100.1	18642946
AT2G30490.1	CDY05880	AT3G48890.1	23175744
AT2G30490.1	CDY71101	AT3G48890.1	23175744
AT2G30490.1	CDX71001	AT5G22460.1	23175744
AT2G30490.1	CDX88793	AT5G22460.1	23175744
AT2G30490.1	CDX92349	AT5G22460.1	23175744
AT2G30490.1	CDY09141	AT5G22460.1	23175744
AT2G30490.1	CDY26931	AT5G22460.1	23175744
AT2G30490.1	CDY35686	AT5G22460.1	23175744
AT2G30490.1	CDY68104	AT5G22460.1	23175744
AT2G30490.1	CDY00522	AT5G52240.1	23175744
AT2G30490.1	CDY61583	AT5G52240.1	23175744
AT2G30490.1	CDX96233	AT5G53560.1	23175744
AT2G30490.1	CDY14370	AT5G53560.1	23175744
AT2G30490.1	CDY20247	AT5G53560.1	23175744
AT2G30490.1	CDY28830	AT5G53560.1	23175744

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29671	Canola	extracellular, golgi, plasma membrane	96.63	96.63
CDX84829	Canola	extracellular, golgi, plasma membrane	88.71	88.71
CDY23995	Canola	extracellular, golgi, plasma membrane	88.32	88.32
AT2G30490.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	88.12	88.12
CDY02068	Canola	extracellular, golgi, plasma membrane	87.92	87.92
CDY10741	Canola	extracellular, golgi, plasma membrane	87.92	87.92
CDX97826	Canola	extracellular, golgi, plasma membrane	87.33	87.33
CDY29670	Canola	extracellular, golgi, plasma membrane	87.33	87.33
CDX84830	Canola	endoplasmic reticulum, golgi, plasma membrane	85.15	85.49
CDY23996	Canola	endoplasmic reticulum, extracellular, plasma membrane	80.4	84.41
PGSC0003DMT400078288	Potato	cytosol	50.49	79.69
PGSC0003DMT400078290	Potato	endoplasmic reticulum, golgi	79.6	79.6
KRH72830	Soybean	endoplasmic reticulum	78.42	78.26
KRH17200	Soybean	endoplasmic reticulum	77.82	77.82
VIT_06s0004g08150.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	77.03	77.03
EES03803	Sorghum	endoplasmic reticulum, golgi	76.24	76.24
HORVU3Hr1G080830.1	Barley	endoplasmic reticulum	75.25	75.25
TraesCS3D01G336900.2	Wheat	endoplasmic reticulum	75.05	74.9
TraesCS3B01G375100.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	74.85	74.7
TraesCS3A01G342900.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	74.65	74.51
Zm00001d012510_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	56.63	74.48
TraesCS2D01G300200.1	Wheat	endoplasmic reticulum	69.11	68.97
TraesCS2B01G317700.1	Wheat	endoplasmic reticulum, golgi	41.78	65.33
Os01t0820000-00	Rice	plasma membrane	25.15	38.14

Protein Annotations

Gene3D:1.10.630.10	MapMan:9.2.1.2	GO:A0A078E9Y0	EnsemblPlants:CDX97827	ProteinID:CDX97827	ProteinID:CDX97827.1
InterPro:Cyt_P450	InterPro:Cyt_P450_CS	InterPro:Cyt_P450_E_grp-I	InterPro:Cyt_P450_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005506	GO:GO:0008150	GO:GO:0008152	GO:GO:0016705	GO:GO:0020037
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00105139001	InterPro:IPR036396	PFAM:PF00067	PRINTS:PR00385	PRINTS:PR00463
ScanProsite:PS00086	PANTHER:PTHR24298	PANTHER:PTHR24298:SF56	SUPFAM:SSF48264	UniParc:UPI0004EE65D9	SEG:seg

Description

BnaC04g41120D

Coordinates

chrLK031901:+:769401..771946

Molecular Weight (calculated)

57721.4 Da

IEP (calculated)

9.420

GRAVY (calculated)

-0.197

Length

505 amino acids

Sequence
(BLAST)

001: MDLLLVEKSL IAVFVAVVLA TVVSKLRGKK LKLPPSPIPI PIFGNWLQVG DDLNHRKLVD YAKKFGDLFL FKMGQRNIVV VSSPDLTKEV LHTQGVEFGS
101: RHRNMVYDIF TGKGQDMVFT VYGEHWRKMR RIMTVPFFTN KVVQQNHEGW EFEAASVVED VKKNPDAATK GIVVRKRLQL MVYNNMFGIM FGKRFESEDD
201: PLFLRLKFLN GERGRLTQSF EYNYGDFIPI LRPFLRGYLK ICQDVKDRRF ALFKKYFVDD RKQVATPKPT GVGGLKCAID HILEAQNKGE INEDNVLYIV
301: ENINVAAIET TLTSMEWGIA ELVNHPDIQS KLRNEIDTVL GLGVQVTEPE LHRLPYLQAV IKETIRRRMA VPLLVPHMNL KDAKLAGYDI PEESRILINA
401: WWLANNPDSW NSPEEFRPER FLEEEAHVEA NGNDFRYVPF GAGRRSCPGI ILALPILGIT IGRLVQNFEL LPPPGQSKID TSEKRGQFSL QILNQSTIVM
501: KPRAF

Best Arabidopsis Sequence Match ( AT2G30490.1 )
(BLAST)

001: MDLLLLEKSL IAVFVAVILA TVISKLRGKK LKLPPGPIPI PIFGNWLQVG DDLNHRNLVD YAKKFGDLFL LRMGQRNLVV VSSPDLTKEV LLTQGVEFGS
101: RTRNVVFDIF TGKGQDMVFT VYGEHWRKMR RIMTVPFFTN KVVQQNREGW EFEAASVVED VKKNPDSATK GIVLRKRLQL MMYNNMFRIM FDRRFESEDD
201: PLFLRLKALN GERSRLAQSF EYNYGDFIPI LRPFLRGYLK ICQDVKDRRI ALFKKYFVDE RKQIASSKPT GSEGLKCAID HILEAEQKGE INEDNVLYIV
301: ENINVAAIET TLWSIEWGIA ELVNHPEIQS KLRNELDTVL GPGVQVTEPD LHKLPYLQAV VKETLRLRMA IPLLVPHMNL HDAKLAGYDI PAESKILVNA
401: WWLANNPNSW KKPEEFRPER FFEEESHVEA NGNDFRYVPF GVGRRSCPGI ILALPILGIT IGRMVQNFEL LPPPGQSKVD TSEKGGQFSL HILNHSIIVM
501: KPRNC

Arabidopsis Description

CYP73A5Cinnamate-4-hydroxylase [Source:UniProtKB/TrEMBL;Acc:B1GV49]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.