Factsheet for PGSC0003DMT400078288

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 2
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000230
PGSC0003DMT400011903
PGSC0003DMT400011904
PGSC0003DMT400013490
PGSC0003DMT400013956
PGSC0003DMT400015793
PGSC0003DMT400019164
PGSC0003DMT400029745
PGSC0003DMT400032086
PGSC0003DMT400037158
PGSC0003DMT400047688
PGSC0003DMT400047969
PGSC0003DMT400048727
PGSC0003DMT400049928
PGSC0003DMT400060862
PGSC0003DMT400060959
PGSC0003DMT400063187
PGSC0003DMT400072932
PGSC0003DMT400078288	endoplasmic reticulum
PGSC0003DMT400078290	endoplasmic reticulum
PGSC0003DMT400093662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30490.1	PGSC0003DMT400047969	AT1G20330.1	23175744
AT2G30490.1	PGSC0003DMT400048727	AT1G20330.1	23175744
AT2G30490.1	PGSC0003DMT400093662	AT1G20330.1	23175744
AT2G30490.1	PGSC0003DMT400011903	AT1G51570.1	23175744
AT2G30490.1	PGSC0003DMT400011904	AT1G51570.1	23175744
AT2G30490.1	PGSC0003DMT400013490	AT1G51570.1	23175744
AT2G30490.1	PGSC0003DMT400029745	AT1G51570.1	23175744
AT2G30490.1	PGSC0003DMT400060862	AT1G51570.1	23175744
AT2G30490.1	PGSC0003DMT400060959	AT1G51570.1	23175744
AT2G30490.1	PGSC0003DMT400032086	AT1G64090.2	23175744
AT2G30490.1	PGSC0003DMT400072932	AT2G03510.1	23175744
AT2G30490.1	PGSC0003DMT400015793	AT2G20990.3	23175744
AT2G30490.1	PGSC0003DMT400078288	AT2G30490.1	23175744
AT2G30490.1	PGSC0003DMT400078290	AT2G30490.1	23175744
AT2G30490.1	PGSC0003DMT400078288	AT2G30490.1	23175744
AT2G30490.1	PGSC0003DMT400078290	AT2G30490.1	23175744
AT2G30490.1	PGSC0003DMT400000230	AT2G46170.1	23175744
AT2G30490.1	PGSC0003DMT400049928	AT2G46170.1	23175744
AT2G30490.1	PGSC0003DMT400063187	AT3G48100.1	18642946
AT2G30490.1	PGSC0003DMT400037158	AT3G48890.1	23175744
AT2G30490.1	PGSC0003DMT400019164	AT5G22460.1	23175744
AT2G30490.1	PGSC0003DMT400032086	AT5G41600.1	23175744
AT2G30490.1	PGSC0003DMT400013956	AT5G53560.1	23175744
AT2G30490.1	PGSC0003DMT400047688	AT5G53560.1	23175744

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078290	Potato	endoplasmic reticulum, golgi	99.06	62.77
KRH72830	Soybean	endoplasmic reticulum	89.06	56.32
KRH17200	Soybean	endoplasmic reticulum	88.44	56.04
CDY10741	Canola	extracellular, golgi, plasma membrane	88.12	55.84
VIT_06s0004g08150.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	88.12	55.84
Bra018311.1-P	Field mustard	extracellular, golgi, plasma membrane	88.12	55.84
Bra021637.1-P	Field mustard	extracellular, golgi, plasma membrane	87.81	55.64
CDY02068	Canola	extracellular, golgi, plasma membrane	87.81	55.64
CDY29670	Canola	extracellular, golgi, plasma membrane	87.5	55.45
CDX97826	Canola	extracellular, golgi, plasma membrane	87.5	55.45
CDY23995	Canola	extracellular, golgi, plasma membrane	87.19	55.25
Bra022803.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	87.19	55.25
CDX84829	Canola	extracellular, golgi, plasma membrane	87.19	55.25
AT2G30490.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	86.56	54.85
EES03803	Sorghum	endoplasmic reticulum, golgi	86.56	54.85
HORVU3Hr1G080830.1	Barley	endoplasmic reticulum	85.94	54.46
TraesCS3B01G375100.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	84.38	53.36
TraesCS3A01G342900.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	84.38	53.36
TraesCS3D01G336900.2	Wheat	endoplasmic reticulum	84.06	53.16
CDX84830	Canola	endoplasmic reticulum, golgi, plasma membrane	81.56	51.89
Bra022802.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	80.0	50.89
Bra021636.1-P	Field mustard	extracellular, golgi, plasma membrane	80.0	50.69
CDY29671	Canola	extracellular, golgi, plasma membrane	79.69	50.49
CDX97827	Canola	endoplasmic reticulum, golgi, plasma membrane	79.69	50.49
CDY23996	Canola	endoplasmic reticulum, extracellular, plasma membrane	73.44	48.86
PGSC0003DMT400035590	Potato	cytosol, plasma membrane	66.56	47.97
TraesCS2D01G300200.1	Wheat	endoplasmic reticulum	75.31	47.63
Zm00001d012510_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	53.44	44.53
TraesCS2B01G317700.1	Wheat	endoplasmic reticulum, golgi	35.0	34.67
Os01t0820000-00	Rice	plasma membrane	34.38	33.03

Protein Annotations

Gene3D:1.10.630.10	MapMan:50.1.13	InterPro:Cyt_P450	InterPro:Cyt_P450_CS	InterPro:Cyt_P450_E_grp-I	InterPro:Cyt_P450_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0004497	GO:GO:0005488	GO:GO:0005506	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016705	GO:GO:0020037	GO:GO:0046872	GO:GO:0055114
InterPro:IPR036396	UniProt:M1CZT5	PFAM:PF00067	EnsemblPlantsGene:PGSC0003DMG401030469	PGSC:PGSC0003DMG401030469	EnsemblPlants:PGSC0003DMT400078288
PRINTS:PR00385	PRINTS:PR00463	ScanProsite:PS00086	PANTHER:PTHR24298	PANTHER:PTHR24298:SF56	SUPFAM:SSF48264
UniParc:UPI000294ACDF	SEG:seg	:	:	:	:

Description

Cinnamic acid 4-hydroxylase [Source:PGSC_GENE;Acc:PGSC0003DMG401030469]

Coordinates

chr6:-:57643272..57647008

Molecular Weight (calculated)

36916.9 Da

IEP (calculated)

8.104

GRAVY (calculated)

-0.313

Length

320 amino acids

Sequence
(BLAST)

001: MFRITFDRRF ESEDDPLFVK LRALNGERSR LAQSFEYNYG DFIPILRPFL RGYLKICKEV KEKRLKLFKD YFVDERKKLA NTKSMDSNAL KCAIDHILDA
101: QQKGEINEDN VLYIVENINV AAIETTLWSI EWGIAELVNH PHIQKKLRDE IDTVLGPGVQ VTEPDMPKLP YLQAVIKETL RLRMAIPLLV PHMNLHDAKL
201: AGYDIPAESK ILVNAWWLAN DPAHWKKPEE FRPERFFEEE KHVEANGNDF RFLPFGVGRR SCPGIILALP ILGITLGRLV QNFEMLPPPG QSKLDTSEKG
301: GQFSLHILKH STIVMKPRSF

Best Arabidopsis Sequence Match ( AT2G30490.1 )
(BLAST)

001: MDLLLLEKSL IAVFVAVILA TVISKLRGKK LKLPPGPIPI PIFGNWLQVG DDLNHRNLVD YAKKFGDLFL LRMGQRNLVV VSSPDLTKEV LLTQGVEFGS
101: RTRNVVFDIF TGKGQDMVFT VYGEHWRKMR RIMTVPFFTN KVVQQNREGW EFEAASVVED VKKNPDSATK GIVLRKRLQL MMYNNMFRIM FDRRFESEDD
201: PLFLRLKALN GERSRLAQSF EYNYGDFIPI LRPFLRGYLK ICQDVKDRRI ALFKKYFVDE RKQIASSKPT GSEGLKCAID HILEAEQKGE INEDNVLYIV
301: ENINVAAIET TLWSIEWGIA ELVNHPEIQS KLRNELDTVL GPGVQVTEPD LHKLPYLQAV VKETLRLRMA IPLLVPHMNL HDAKLAGYDI PAESKILVNA
401: WWLANNPNSW KKPEEFRPER FFEEESHVEA NGNDFRYVPF GVGRRSCPGI ILALPILGIT IGRMVQNFEL LPPPGQSKVD TSEKGGQFSL HILNHSIIVM
501: KPRNC

Arabidopsis Description

CYP73A5Cinnamate-4-hydroxylase [Source:UniProtKB/TrEMBL;Acc:B1GV49]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.