Factsheet for PGSC0003DMT400015793

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 2
extracellular 5
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g111520.2.1	Tomato	nucleus	97.96	97.96
VIT_03s0038g02330.t01	Wine grape	endoplasmic reticulum	78.48	78.48
KRH29282	Soybean	endoplasmic reticulum	78.48	78.48
KRH24304	Soybean	endoplasmic reticulum	78.11	78.11
GSMUA_Achr4P25570_001	Banana	endoplasmic reticulum, extracellular	75.7	75.84
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	74.21	75.19
KRH51399	Soybean	endoplasmic reticulum, extracellular, plasma membrane	74.77	75.19
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	74.77	74.91
EER99265	Sorghum	endoplasmic reticulum	74.21	74.21
CDX81995	Canola	endoplasmic reticulum, extracellular	74.4	74.12
OQU92056	Sorghum	endoplasmic reticulum	73.65	73.65
Bra031157.1-P	Field mustard	endoplasmic reticulum, extracellular	73.84	73.57
CDY13846	Canola	endoplasmic reticulum, extracellular	73.84	73.57
Zm00001d006238_P001	Maize	plasma membrane	73.47	73.47
HORVU5Hr1G084010.1	Barley	endoplasmic reticulum, extracellular	73.1	73.1
PGSC0003DMT400075422	Potato	endoplasmic reticulum, extracellular	72.91	72.91
TraesCS5A01G330400.1	Wheat	golgi	72.36	72.36
TraesCS5D01G336200.1	Wheat	endoplasmic reticulum	71.99	71.99
TraesCS5B01G330600.1	Wheat	endoplasmic reticulum	72.36	70.52
AT2G20990.3	Thale cress	endoplasmic reticulum, extracellular	73.84	68.74
Zm00001d030116_P001	Maize	cytosol	38.22	67.99
AT2G21010.1	Thale cress	cytosol	30.98	65.23
GSMUA_Achr1P26490_001	Banana	cytosol, mitochondrion	64.19	65.16
HORVU5Hr1G084020.3	Barley	cytosol	25.05	61.93
TraesCS5D01G336100.1	Wheat	cytosol	35.25	61.49
TraesCS5B01G330500.1	Wheat	cytosol	33.21	60.88
Zm00001d022625_P006	Maize	cytosol, peroxisome, plastid	71.61	60.41
PGSC0003DMT400055528	Potato	mitochondrion	53.99	53.39
Os01t0819300-01	Rice	cytosol, mitochondrion, plastid	10.39	48.7
PGSC0003DMT400054286	Potato	extracellular	4.64	35.71
PGSC0003DMT400068835	Potato	extracellular	4.64	35.71
PGSC0003DMT400041534	Potato	cytosol	8.72	32.41
PGSC0003DMT400020478	Potato	cytosol	24.12	30.52
PGSC0003DMT400036226	Potato	endoplasmic reticulum	31.17	30.43
AT2G21040.1	Thale cress	cytosol	13.73	28.35
PGSC0003DMT400078829	Potato	extracellular, plasma membrane	13.54	28.29
PGSC0003DMT400026606	Potato	cytosol, endoplasmic reticulum, mitochondrion, plastid	25.05	28.01
PGSC0003DMT400046490	Potato	cytosol	4.27	27.38
PGSC0003DMT400035570	Potato	cytosol	18.74	27.01
PGSC0003DMT400078832	Potato	cytosol	13.17	26.79

Protein Annotations

EntrezGene:102597682	Gene3D:2.60.40.150	MapMan:5.8.1.2	InterPro:C2_dom	InterPro:C2_domain_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0006810	GO:GO:0006869	GO:GO:0008150	GO:GO:0008289
GO:GO:0016020	GO:GO:0016021	InterPro:IPR000008	InterPro:IPR031468	InterPro:IPR035892	UniProt:M1A6L5
PFAM:PF00168	PFAM:PF17047	EnsemblPlantsGene:PGSC0003DMG401006174	PGSC:PGSC0003DMG401006174	EnsemblPlants:PGSC0003DMT400015793	PRINTS:PR00360
PFscan:PS50004	PFscan:PS51847	PANTHER:PTHR10774	PANTHER:PTHR10774:SF50	SMART:SM00239	InterPro:SMP_LBD
SUPFAM:SSF49562	InterPro:Synaptotagmin_SMP	TMHMM:TMhelix	UniParc:UPI000294C0C8	RefSeq:XP_006359693.1	SEG:seg

Description

Plant synaptotagmin [Source:PGSC_GENE;Acc:PGSC0003DMG401006174]

Coordinates

chr1:-:87454143..87463868

Molecular Weight (calculated)

61283.5 Da

IEP (calculated)

6.745

GRAVY (calculated)

-0.305

Length

539 amino acids

Sequence
(BLAST)

001: MGFVSTILGF CGFGVGVSCG LTIGYYLFIY FQPCDVKDPV IRPLVERDSK SLQQLLSEIP LWVKCPDYDR VDWLNKFLEY MWPYLDKAIC RTAKDIAAPI
101: IAEQIPKYKI DSVEFETLTL GSLPPTFQGM KVYVTEEKEL IMEPSIKWAG NPDVTVAVKA FGLKATVQVV DLQVFAAPRI TLKPLVPSFP CFANISVSLM
201: EKPHVDFGLK LLGADLMSIP GLYRFVQETI KDQVANMYLW PKTLEVQILD PSKAMKKPVG VLHVKILRAM NLKKKDLLGA SDPYVKLKLT ESKLPSKKTP
301: VRHKNLNPEW NEEFNMVVKD PESQALELSV YDWEQIGKHD KMGMNVIPLK DLTPDESKTM TLNLLKNMDA NDAQNDKDRG QIMVELTYKP FKEDELPKDF
401: EDNDAAHKVP EGTPPGGGVL MIIVHEAQDV EGKHHTNPYV KILFKGEERK TKQVKKNRDP RWGEEFNFVL EEPPVNDRLH MEVVSTSTRI GLLHPKETLG
501: YVDINLSDVV SNKRINEKYH LIDSKNGRLQ VELQWRTAS

Best Arabidopsis Sequence Match ( AT2G20990.1 )
(BLAST)

001: MGFFSTILGF CGFGVGISLG LVIGYVLFVY LLPNDVKDPE IRSIADQDPK AMLRMLPEIP LWVKNPDFDR VDWINRFLEY MWPYLDKAIC KTAKNIAKPI
101: IEEQIPKYKI DSVEFETLTL GSLPPTFQGM KVYLTDEKEL IMEPCLKWAA NPNILVAIKA FGLKATVQVV DLQVFAQPRI TLKPLVPSFP CFANIYVSLM
201: EKPHVDFGLK LGGADLMSIP GLYRFVQEQI KDQVANMYLW PKTLVVPILD PAKAFRRPVG IVHVKVVRAV GLRKKDLMGG ADPFVKIKLS EDKIPSKKTT
301: VKHKNLNPEW NEEFKFSVRD PQTQVLEFSV YDWEQVGNPE KMGMNVLALK EMVPDEHKAF TLELRKTLDG GEDGQPPDKY RGKLEVELLY KPFTEEEMPK
401: GFEETQAVQK APEGTPAAGG MLVVIVHSAE DVEGKHHTNP YVRIYFKGEE RKTKHVKKNR DPRWNEEFTF MLEEPPVREK LHVEVLSTSS RIGLLHPKET
501: LGYVDIPVVD VVNNKRMNQK FHLIDSKNGK IQIELEWRTA S

Arabidopsis Description

SYTASynaptotagmin A [Source:UniProtKB/TrEMBL;Acc:F4IFM6]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.