Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g089330.1.1 | Tomato | endoplasmic reticulum, extracellular | 94.99 | 97.52 |
| VIT_18s0001g14630.t01 | Wine grape | endoplasmic reticulum, extracellular | 75.32 | 75.32 |
| GSMUA_Achr4P25570_001 | Banana | endoplasmic reticulum, extracellular | 73.84 | 73.98 |
| PGSC0003DMT400015793 | Potato | endoplasmic reticulum | 72.91 | 72.91 |
| KRH17448 | Soybean | mitochondrion | 72.73 | 72.86 |
| KRH05967 | Soybean | endoplasmic reticulum, extracellular | 72.17 | 72.3 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 71.43 | 71.56 |
| EER99265 | Sorghum | endoplasmic reticulum | 70.69 | 70.69 |
| Zm00001d006238_P001 | Maize | plasma membrane | 70.5 | 70.5 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 69.02 | 69.92 |
| OQU92056 | Sorghum | endoplasmic reticulum | 69.76 | 69.76 |
| AT1G20080.3 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 68.65 | 68.9 |
| Bra016478.1-P | Field mustard | endoplasmic reticulum, extracellular | 64.38 | 68.17 |
| CDY54339 | Canola | endoplasmic reticulum, extracellular | 69.39 | 68.12 |
| CDY62938 | Canola | endoplasmic reticulum, extracellular | 69.39 | 68.12 |
| CDY43415 | Canola | endoplasmic reticulum, extracellular | 67.72 | 67.84 |
| TraesCS5D01G336200.1 | Wheat | endoplasmic reticulum | 67.72 | 67.72 |
| Bra012209.1-P | Field mustard | cytosol | 48.24 | 67.36 |
| Zm00001d030116_P001 | Maize | cytosol | 37.66 | 67.0 |
| TraesCS5A01G330400.1 | Wheat | golgi | 66.98 | 66.98 |
| CDY57593 | Canola | endoplasmic reticulum, extracellular | 68.46 | 66.85 |
| HORVU5Hr1G084010.1 | Barley | endoplasmic reticulum, extracellular | 66.79 | 66.79 |
| TraesCS5B01G330600.1 | Wheat | endoplasmic reticulum | 67.72 | 66.0 |
| GSMUA_Achr1P26490_001 | Banana | cytosol, mitochondrion | 60.85 | 61.77 |
| TraesCS5D01G336100.1 | Wheat | cytosol | 34.14 | 59.55 |
| TraesCS5B01G330500.1 | Wheat | cytosol | 32.1 | 58.84 |
| Zm00001d022625_P006 | Maize | cytosol, peroxisome, plastid | 68.83 | 58.06 |
| HORVU5Hr1G084020.3 | Barley | cytosol | 22.82 | 56.42 |
| PGSC0003DMT400055528 | Potato | mitochondrion | 52.13 | 51.56 |
| PGSC0003DMT400054286 | Potato | extracellular | 4.45 | 34.29 |
| PGSC0003DMT400068835 | Potato | extracellular | 4.45 | 34.29 |
| PGSC0003DMT400046490 | Potato | cytosol | 5.01 | 32.14 |
| PGSC0003DMT400036226 | Potato | endoplasmic reticulum | 30.43 | 29.71 |
| PGSC0003DMT400020478 | Potato | cytosol | 23.01 | 29.11 |
| PGSC0003DMT400078829 | Potato | extracellular, plasma membrane | 13.91 | 29.07 |
| PGSC0003DMT400041534 | Potato | cytosol | 7.42 | 27.59 |
| PGSC0003DMT400078832 | Potato | cytosol | 13.17 | 26.79 |
| PGSC0003DMT400026606 | Potato | cytosol, endoplasmic reticulum, mitochondrion, plastid | 23.93 | 26.76 |
| PGSC0003DMT400035570 | Potato | cytosol | 18.37 | 26.47 |
Protein Annotations
| EntrezGene:102587988 | Gene3D:2.60.40.150 | MapMan:5.8.1.2 | InterPro:C2_dom | InterPro:C2_domain_sf | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 |
| GO:GO:0006810 | GO:GO:0006869 | GO:GO:0008150 | GO:GO:0008289 | GO:GO:0009306 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR000008 | InterPro:IPR031468 | InterPro:IPR035892 | UniProt:M1CV57 |
| PFAM:PF00168 | PFAM:PF17047 | EnsemblPlantsGene:PGSC0003DMG400029335 | PGSC:PGSC0003DMG400029335 | EnsemblPlants:PGSC0003DMT400075422 | PRINTS:PR00360 |
| PFscan:PS50004 | PFscan:PS51847 | PANTHER:PTHR10774 | PANTHER:PTHR10774:SF50 | SMART:SM00239 | InterPro:SMP_LBD |
| SUPFAM:SSF49562 | InterPro:Synaptotagmin_SMP | TMHMM:TMhelix | UniParc:UPI000294EE39 | RefSeq:XP_006342567.1 | : |
Description
Plant synaptotagmin [Source:PGSC_GENE;Acc:PGSC0003DMG400029335]
Coordinates
chr12:-:57122052..57126218
Molecular Weight (calculated)
61386.0 Da
IEP (calculated)
6.695
GRAVY (calculated)
-0.200
Length
539 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFISSILGL FGFGMGIVIG LVIGYFIFIY VLPTDVKHPD IRPLAEQDTE SLQRLLPEIP LWVKNPDYER LDWLNKMIEL MWPYLDKAIC KTAKGIVDPI
101: IAEQIPQYKI ESVEFQSFTL GTLPPTFPGM KVYITEEKEL IMEPVIKWAA NPNITVAVKA FGLKATAQVI DLQIFASPRI TLKPLVPTFP CFAKIYVSLM
201: EKPHVDFGLK LLGADAMSIP GLYRFVQEII KDQVASMYLW PKTLEVQILD PSKAMKRPVG ILNVTVVKAM KLKKTDLLGL SDPYVKLKIV NEKPSTKKTT
301: VKHKNLNPEW NEEFSFVVKD PETQVLKFSV YDWEQVGSHE KMGVNIVPLK DLIPDEPKVL TLELLKNLKP DDVQNEKARG QLVLEVMYKA FNDEELANGA
401: DESNTVEKAP DGTPDGGGML VVIVHEGQDL EGKHHTNPSV RMLFRGEERR TKVVKKNRDP RWEEEFQFVL EEPPVNDRIH VEVVSTSKRM GLRHSKETLG
501: YVDVYLADVI NNKRINERYH LIDSKNGRLQ IELQWRTAS
101: IAEQIPQYKI ESVEFQSFTL GTLPPTFPGM KVYITEEKEL IMEPVIKWAA NPNITVAVKA FGLKATAQVI DLQIFASPRI TLKPLVPTFP CFAKIYVSLM
201: EKPHVDFGLK LLGADAMSIP GLYRFVQEII KDQVASMYLW PKTLEVQILD PSKAMKRPVG ILNVTVVKAM KLKKTDLLGL SDPYVKLKIV NEKPSTKKTT
301: VKHKNLNPEW NEEFSFVVKD PETQVLKFSV YDWEQVGSHE KMGVNIVPLK DLIPDEPKVL TLELLKNLKP DDVQNEKARG QLVLEVMYKA FNDEELANGA
401: DESNTVEKAP DGTPDGGGML VVIVHEGQDL EGKHHTNPSV RMLFRGEERR TKVVKKNRDP RWEEEFQFVL EEPPVNDRIH VEVVSTSKRM GLRHSKETLG
501: YVDVYLADVI NNKRINERYH LIDSKNGRLQ IELQWRTAS
001: MGFFSTILGF CGFGVGISLG LVIGYVLFVY LLPNDVKDPE IRSIADQDPK AMLRMLPEIP LWVKNPDFDR VDWINRFLEY MWPYLDKAIC KTAKNIAKPI
101: IEEQIPKYKI DSVEFETLTL GSLPPTFQGM KVYLTDEKEL IMEPCLKWAA NPNILVAIKA FGLKATVQVV DLQVFAQPRI TLKPLVPSFP CFANIYVSLM
201: EKPHVDFGLK LGGADLMSIP GLYRFVQEQI KDQVANMYLW PKTLVVPILD PAKAFRRPVG IVHVKVVRAV GLRKKDLMGG ADPFVKIKLS EDKIPSKKTT
301: VKHKNLNPEW NEEFKFSVRD PQTQVLEFSV YDWEQVGNPE KMGMNVLALK EMVPDEHKAF TLELRKTLDG GEDGQPPDKY RGKLEVELLY KPFTEEEMPK
401: GFEETQAVQK APEGTPAAGG MLVVIVHSAE DVEGKHHTNP YVRIYFKGEE RKTKHVKKNR DPRWNEEFTF MLEEPPVREK LHVEVLSTSS RIGLLHPKET
501: LGYVDIPVVD VVNNKRMNQK FHLIDSKNGK IQIELEWRTA S
101: IEEQIPKYKI DSVEFETLTL GSLPPTFQGM KVYLTDEKEL IMEPCLKWAA NPNILVAIKA FGLKATVQVV DLQVFAQPRI TLKPLVPSFP CFANIYVSLM
201: EKPHVDFGLK LGGADLMSIP GLYRFVQEQI KDQVANMYLW PKTLVVPILD PAKAFRRPVG IVHVKVVRAV GLRKKDLMGG ADPFVKIKLS EDKIPSKKTT
301: VKHKNLNPEW NEEFKFSVRD PQTQVLEFSV YDWEQVGNPE KMGMNVLALK EMVPDEHKAF TLELRKTLDG GEDGQPPDKY RGKLEVELLY KPFTEEEMPK
401: GFEETQAVQK APEGTPAAGG MLVVIVHSAE DVEGKHHTNP YVRIYFKGEE RKTKHVKKNR DPRWNEEFTF MLEEPPVREK LHVEVLSTSS RIGLLHPKET
501: LGYVDIPVVD VVNNKRMNQK FHLIDSKNGK IQIELEWRTA S
Arabidopsis Description
SYTASynaptotagmin A [Source:UniProtKB/TrEMBL;Acc:F4IFM6]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.