Factsheet for PGSC0003DMT400078829

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046490	Potato	cytosol	30.23	92.86
PGSC0003DMT400054286	Potato	extracellular	24.81	91.43
PGSC0003DMT400068835	Potato	extracellular	24.81	91.43
PGSC0003DMT400041534	Potato	cytosol	29.46	52.41
Solyc07g007680.2.1	Tomato	plastid	97.29	44.66
Bra015431.1-P	Field mustard	endoplasmic reticulum, extracellular	76.36	35.24
CDY47278	Canola	endoplasmic reticulum, extracellular	76.36	35.24
CDY15543	Canola	endoplasmic reticulum, extracellular	75.97	34.39
CDY10116	Canola	endoplasmic reticulum, extracellular	76.36	34.26
VIT_11s0118g00230.t01	Wine grape	endoplasmic reticulum, extracellular	75.19	34.22
CDX86575	Canola	endoplasmic reticulum, extracellular	76.36	34.14
AT1G05500.1	Thale cress	endoplasmic reticulum, extracellular	74.03	34.11
PGSC0003DMT400036226	Potato	endoplasmic reticulum	70.93	33.15
KRH03623	Soybean	endoplasmic reticulum	75.58	32.83
GSMUA_Achr1P26040_001	Banana	endoplasmic reticulum, golgi	70.16	32.38
TraesCS2D01G518800.1	Wheat	endoplasmic reticulum, extracellular, plastid	69.38	31.4
TraesCS2B01G545700.3	Wheat	endoplasmic reticulum, extracellular, plastid	68.99	31.23
Zm00001d002090_P001	Maize	endoplasmic reticulum, extracellular, plastid	69.38	31.08
HORVU2Hr1G114590.1	Barley	endoplasmic reticulum, extracellular, plastid	68.6	31.05
TraesCS2A01G517200.1	Wheat	endoplasmic reticulum, extracellular, plastid	68.6	31.05
EES11541	Sorghum	extracellular, golgi	68.6	30.73
GSMUA_Achr7P05380_001	Banana	endoplasmic reticulum	69.38	30.7
Bra030612.1-P	Field mustard	endoplasmic reticulum, extracellular	75.58	30.56
GSMUA_Achr3P19840_001	Banana	endoplasmic reticulum, golgi, plastid	64.73	27.97
PGSC0003DMT400020478	Potato	cytosol	41.09	24.88
PGSC0003DMT400026606	Potato	cytosol, endoplasmic reticulum, mitochondrion, plastid	36.82	19.71
PGSC0003DMT400055528	Potato	mitochondrion	29.46	13.95
PGSC0003DMT400075422	Potato	endoplasmic reticulum, extracellular	29.07	13.91
PGSC0003DMT400015793	Potato	endoplasmic reticulum	28.29	13.54
PGSC0003DMT400035570	Potato	cytosol	17.44	12.03
PGSC0003DMT400078832	Potato	cytosol	0.39	0.38

Protein Annotations

MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0006810	GO:GO:0006869
GO:GO:0008150	GO:GO:0008289	GO:GO:0016020	GO:GO:0016021	InterPro:IPR031468	UniProt:M1D0T2
PFAM:PF17047	EnsemblPlantsGene:PGSC0003DMG401030679	PGSC:PGSC0003DMG401030679	EnsemblPlants:PGSC0003DMT400078829	PFscan:PS51847	PANTHER:PTHR10774
PANTHER:PTHR10774:SF166	InterPro:SMP_LBD	InterPro:Synaptotagmin_SMP	TMHMM:TMhelix	UniParc:UPI00029487B8	SEG:seg

Description

Plant synaptotagmin [Source:PGSC_GENE;Acc:PGSC0003DMG401030679]

Coordinates

chr7:-:3602149..3608892

Molecular Weight (calculated)

28741.3 Da

IEP (calculated)

6.033

GRAVY (calculated)

0.255

Length

258 amino acids

Sequence
(BLAST)

001: MSFVLGVVIG VLVGVGLIVG FVKSENYRSK CRSELATTIA AFARMTVEDS RKIFTPEQYP PWVVFSNQQK LNWLNSHLEK IWPFVDEAAS ELVKSSVEPI
101: LEQYRPMILA SLKFSKFTLG TVAPQFTGIS ILEGGSEGIT MELEMNWDGN PSIILDIMTY VGVGLPVQVK NIGFTGIFRL IFRPLVDEFP CFGAVCYSLR
201: KKKKLDFTLK VVGGDMTAIP GISDAIEGTI RDAIEDSITW PVRKIIPILP GDYRYSFL

Best Arabidopsis Sequence Match ( AT1G05500.1 )
(BLAST)

001: MGFIVGVVIG LLVGIAIIIG FVKLENSRSK LRSELANTVA AFARMTVEDS RKLLPPEFYP SWVVFSERQK LTWLNHHLTK IWPYVDEAAS ELIKASVEPV
101: LEQYRPAIVA SLTFSKLTLG TVAPQFTGVS VIDGDKNGIT LELDMQWDGN PNIVLGVKTL VGVSLPIQVK NIGFTGVFRL IFRPLVEDFP CFGAVSVSLR
201: EKKKLDFTLK VVGGDISAIP GLSEAIEETI RDAVEDSITW PVRKVIPIIP GDYSDLELKP VGMLEVKLVQ AKNLTNKDLV GKSDPFAKMF IRPLREKTKR
301: SKTINNDLNP IWNEHFEFVV EDASTQHLVV RIYDDEGVQA SELIGCAQIR LCELEPGKVK DVWLKLVKDL EIQRDTKNRG EVHLELLYIP YGSGNGIVNP
401: FVTSSMTSLE RVLKNDTTDE ENASSRKRKD VIVRGVLSVT VISAEEIPIQ DLMGKADPYV VLSMKKSGAK SKTRVVNDSL NPVWNQTFDF VVEDGLHDML
501: VLEVWDHDTF GKDYIGRCIL TLTRVIMEEE YKDWYPLDES KTGKLQLHLK WMAQSIYRDS

Arabidopsis Description

SYT5Synaptotagmin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L706]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.