CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

nucleus 1
extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15543	Canola	endoplasmic reticulum, extracellular	97.23	98.42
CDY47278	Canola	endoplasmic reticulum, extracellular	93.59	96.6
CDY10116	Canola	endoplasmic reticulum, extracellular	93.76	94.09
AT1G05500.1	Thale cress	endoplasmic reticulum, extracellular	90.99	93.75
Bra030612.1-P	Field mustard	endoplasmic reticulum, extracellular	97.4	88.09
PGSC0003DMT400068835	Potato	extracellular	9.88	81.43
PGSC0003DMT400054286	Potato	extracellular	9.88	81.43
PGSC0003DMT400046490	Potato	cytosol	11.27	77.38
PGSC0003DMT400078829	Potato	extracellular, plasma membrane	34.14	76.36
PGSC0003DMT400020478	Potato	cytosol	55.81	75.59
Solyc07g007680.2.1	Tomato	plastid	72.79	74.73
VIT_11s0118g00230.t01	Wine grape	endoplasmic reticulum, extracellular	72.96	74.25
Solyc12g009790.1.1	Tomato	endoplasmic reticulum	72.27	73.81
KRH03623	Soybean	endoplasmic reticulum	74.7	72.56
PGSC0003DMT400078832	Potato	cytosol	33.28	72.45
GSMUA_Achr1P26040_001	Banana	endoplasmic reticulum, golgi	69.15	71.38
CDX85729	Canola	endoplasmic reticulum, extracellular, plastid	68.11	70.94
GSMUA_Achr7P05380_001	Banana	endoplasmic reticulum	70.88	70.15
CDY51108	Canola	endoplasmic reticulum, extracellular, plastid	68.28	70.11
TraesCS2B01G545700.3	Wheat	endoplasmic reticulum, extracellular, plastid	68.63	69.47
TraesCS2A01G517200.1	Wheat	endoplasmic reticulum, extracellular, plastid	68.11	68.95
TraesCS2D01G518800.1	Wheat	endoplasmic reticulum, extracellular, plastid	68.11	68.95
HORVU2Hr1G114590.1	Barley	endoplasmic reticulum, extracellular, plastid	68.11	68.95
Zm00001d002090_P001	Maize	endoplasmic reticulum, extracellular, plastid	68.63	68.75
EES11541	Sorghum	extracellular, golgi	68.28	68.4
PGSC0003DMT400041534	Potato	cytosol	16.64	66.21
GSMUA_Achr3P19840_001	Banana	endoplasmic reticulum, golgi, plastid	67.07	64.82
Solyc12g009700.1.1	Tomato	extracellular, plasma membrane	31.37	59.15
Solyc12g009760.1.1	Tomato	extracellular	12.3	57.26
CDY45675	Canola	endoplasmic reticulum, extracellular	32.41	37.03
CDY42483	Canola	endoplasmic reticulum, extracellular	29.64	36.08
CDX67848	Canola	endoplasmic reticulum, extracellular, plasma membrane	29.64	36.08
CDX89094	Canola	endoplasmic reticulum, extracellular, plasma membrane	29.64	36.08
CDY41389	Canola	endoplasmic reticulum, extracellular, plasma membrane	29.98	31.8
CDY13846	Canola	endoplasmic reticulum, extracellular	29.81	31.79
CDX81995	Canola	endoplasmic reticulum, extracellular	29.64	31.61
CDX70250	Canola	endoplasmic reticulum, extracellular	29.81	31.44
CDY62938	Canola	endoplasmic reticulum, extracellular	29.81	31.33
CDY43415	Canola	endoplasmic reticulum, extracellular	28.94	31.04
CDY54339	Canola	endoplasmic reticulum, extracellular	29.46	30.97
CDY57593	Canola	endoplasmic reticulum, extracellular	28.42	29.71

Protein Annotations

Gene3D:2.60.40.150	MapMan:35.1	GO:A0A078DBI4	InterPro:C2_dom	InterPro:C2_domain_sf	EnsemblPlants:CDX86575
ProteinID:CDX86575	ProteinID:CDX86575.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0008289	EnsemblPlantsGene:GSBRNA2T00145202001
InterPro:IPR000008	InterPro:IPR031468	InterPro:IPR035892	PFAM:PF00168	PFAM:PF17047	PRINTS:PR00360
PFscan:PS50004	PFscan:PS51847	PANTHER:PTHR10774	PANTHER:PTHR10774:SF166	SMART:SM00239	InterPro:SMP_LBD
SUPFAM:SSF49562	InterPro:Synaptotagmin_SMP	TMHMM:TMhelix	UniParc:UPI0004EE686D	SEG:seg	:

Description

BnaC08g01280D

Coordinates

chrLK031846:-:764315..768338

Molecular Weight (calculated)

65011.7 Da

IEP (calculated)

5.343

GRAVY (calculated)

-0.045

Length

577 amino acids

Sequence
(BLAST)

001: MGFVVGLVIG LAVGITIIIG FVKAENYRSK LRSELANTVA AFARMTVEDS RKLLPAEFYP SWVVFSERQK LRFGYNSLIW RFVYFQLTWL NHHLTKIWPY
101: VDEAASELIR ASVEPVLEQY RPAVVASLTF SKLTLGTVAP QFTGVSIVEG DENGMTMELD MNWDGNPNIV LGIKTLVGVS LPVQVKNIGF TGVFRLIFRP
201: LVDEFPCFGA VSVSLREKKK LDFTLKVVGG DISAIPGLSD AIEETIRDAV EDSITWPVRK VIPILPGDYS DLELKPVGML EVKLVQAKNL TNKDLVGKSD
301: PFAKMFIRPL REKTQRSKTI NNDLNPIWNE HFEFVVEDAS TQHLVVRIYD DEGVQASELI GCAQIRLCEL EPGKVKDVWL KLVKDLEIQI DNKNRGEVHL
401: ELLYVPFGAG SNGIVNPFAS SSMTSLERVL KNDTTDEENA TSRKRKDVIV RGVLSVTVIS AEEIPIQDMM GKADPYVVLS MKKSGAKSKT RVVNDSLNPV
501: WNQTFDFVVE DGLHDMLVLE VWDHDTFGKD YIGRCILTLT RVIMEEEYKD WFPLDESKAG KIQLHLKWMA QSIYRDS

Best Arabidopsis Sequence Match ( AT1G05500.1 )
(BLAST)

001: MGFIVGVVIG LLVGIAIIIG FVKLENSRSK LRSELANTVA AFARMTVEDS RKLLPPEFYP SWVVFSERQK LTWLNHHLTK IWPYVDEAAS ELIKASVEPV
101: LEQYRPAIVA SLTFSKLTLG TVAPQFTGVS VIDGDKNGIT LELDMQWDGN PNIVLGVKTL VGVSLPIQVK NIGFTGVFRL IFRPLVEDFP CFGAVSVSLR
201: EKKKLDFTLK VVGGDISAIP GLSEAIEETI RDAVEDSITW PVRKVIPIIP GDYSDLELKP VGMLEVKLVQ AKNLTNKDLV GKSDPFAKMF IRPLREKTKR
301: SKTINNDLNP IWNEHFEFVV EDASTQHLVV RIYDDEGVQA SELIGCAQIR LCELEPGKVK DVWLKLVKDL EIQRDTKNRG EVHLELLYIP YGSGNGIVNP
401: FVTSSMTSLE RVLKNDTTDE ENASSRKRKD VIVRGVLSVT VISAEEIPIQ DLMGKADPYV VLSMKKSGAK SKTRVVNDSL NPVWNQTFDF VVEDGLHDML
501: VLEVWDHDTF GKDYIGRCIL TLTRVIMEEE YKDWYPLDES KTGKLQLHLK WMAQSIYRDS

Arabidopsis Description

SYT5Synaptotagmin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L706]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.