Factsheet for Solyc07g007680.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078829	Potato	extracellular, plasma membrane	44.66	97.29
PGSC0003DMT400078832	Potato	cytosol	45.73	96.98
Solyc12g009790.1.1	Tomato	endoplasmic reticulum	85.94	85.49
VIT_11s0118g00230.t01	Wine grape	endoplasmic reticulum, extracellular	78.47	77.78
Bra015431.1-P	Field mustard	endoplasmic reticulum, extracellular	74.56	74.96
CDY47278	Canola	endoplasmic reticulum, extracellular	74.56	74.96
AT1G05500.1	Thale cress	endoplasmic reticulum, extracellular	73.84	74.11
CDY15543	Canola	endoplasmic reticulum, extracellular	75.09	74.04
KRH03623	Soybean	endoplasmic reticulum	77.94	73.74
GSMUA_Achr1P26040_001	Banana	endoplasmic reticulum, golgi	73.13	73.52
CDY10116	Canola	endoplasmic reticulum, extracellular	74.56	72.87
CDX86575	Canola	endoplasmic reticulum, extracellular	74.73	72.79
GSMUA_Achr7P05380_001	Banana	endoplasmic reticulum	74.02	71.36
Solyc12g009700.1.1	Tomato	extracellular, plasma membrane	38.26	70.26
Zm00001d002090_P001	Maize	endoplasmic reticulum, extracellular, plastid	70.64	68.92
TraesCS2B01G545700.3	Wheat	endoplasmic reticulum, extracellular, plastid	69.75	68.77
TraesCS2D01G518800.1	Wheat	endoplasmic reticulum, extracellular, plastid	69.57	68.6
EES11541	Sorghum	extracellular, golgi	70.28	68.58
HORVU2Hr1G114590.1	Barley	endoplasmic reticulum, extracellular, plastid	69.04	68.07
TraesCS2A01G517200.1	Wheat	endoplasmic reticulum, extracellular, plastid	68.86	67.89
Solyc12g009760.1.1	Tomato	extracellular	14.77	66.94
Solyc08g021940.1.1	Tomato	extracellular, plasma membrane	33.63	66.32
Bra030612.1-P	Field mustard	endoplasmic reticulum, extracellular	74.38	65.52
GSMUA_Achr3P19840_001	Banana	endoplasmic reticulum, golgi, plastid	69.04	64.99
Solyc05g047710.2.1	Tomato	endoplasmic reticulum, mitochondrion	31.85	36.16
Solyc10g017590.2.1	Tomato	mitochondrion	30.07	35.58
Solyc01g094030.2.1	Tomato	plastid	31.49	35.05
Solyc10g052520.1.1	Tomato	endoplasmic reticulum, extracellular	15.3	33.46
Solyc09g007860.2.1	Tomato	endoplasmic reticulum	29.54	30.46
Solyc01g111520.2.1	Tomato	nucleus	28.29	29.5
Solyc12g089330.1.1	Tomato	endoplasmic reticulum, extracellular	27.4	29.33

Protein Annotations

Gene3D:2.60.40.150	MapMan:35.1	InterPro:C2_dom	InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0006810	GO:GO:0006869	GO:GO:0008150	GO:GO:0008289	GO:GO:0016020
GO:GO:0016021	InterPro:IPR000008	InterPro:IPR031468	InterPro:IPR035892	UniProt:K4CBN8	PFAM:PF00168
PFAM:PF17047	PRINTS:PR00360	PFscan:PS50004	PFscan:PS51847	PANTHER:PTHR10774	PANTHER:PTHR10774:SF166
SMART:SM00239	InterPro:SMP_LBD	SUPFAM:SSF49562	EnsemblPlantsGene:Solyc07g007680.2	EnsemblPlants:Solyc07g007680.2.1	InterPro:Synaptotagmin_SMP
TMHMM:TMhelix	UniParc:UPI000276AE01	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:-:2323848..2335317

Molecular Weight (calculated)

63206.8 Da

IEP (calculated)

5.457

GRAVY (calculated)

-0.073

Length

562 amino acids

Sequence
(BLAST)

001: MSFVLGVVIG VLVGVGLIVG FVKSENYRSK CRSELATTIA AFARMTVEDS RKIFTPEQYP PWVVFSNQQK LNWLNSHLEK IWPFVDEAAS ELVRSSVEPI
101: LEQYRPMILA SLKFSKFTLG TVAPQFTGIS ILEGGSEGIT MELEMNWDGN PSIILDIMTY LGVGLPVQVK NIGFTGIFRL IFRPLVDEFP CFGAVCYSLR
201: KKKKLDFTLK VVGGDMTAIP GISDAIEGTI RDAIEDSIIW PVRKIIPILP GDYSDLELKP TGVLEVKLVQ AKELTNKDII GKSDPFAELY VRPVRDRMKK
301: SKTINNELNP IWNEHFEFVV EDPLTQHLVI KIYDDEGLQA AELIGCAHVR LNELEPGKVK DVWLKLVKDL EIQRDQKNRG QVHLELLYCP YGMTNGFSNP
401: FANNVPLTSL EKVLKSGVEA AQNGGEINRR KDVIVRGVLS VTVISAEDLA PTDLLGKADP YVVVTMKKTE TKNKTRVVPE SLNPVWNQTF DFVVEDGLHD
501: MLILEVWDHD TFGKDYMGRC ILTLTRVLME GEYKETFELD GAKSGKLNLH LKWAPQPIYR DS

Best Arabidopsis Sequence Match ( AT1G05500.1 )
(BLAST)

001: MGFIVGVVIG LLVGIAIIIG FVKLENSRSK LRSELANTVA AFARMTVEDS RKLLPPEFYP SWVVFSERQK LTWLNHHLTK IWPYVDEAAS ELIKASVEPV
101: LEQYRPAIVA SLTFSKLTLG TVAPQFTGVS VIDGDKNGIT LELDMQWDGN PNIVLGVKTL VGVSLPIQVK NIGFTGVFRL IFRPLVEDFP CFGAVSVSLR
201: EKKKLDFTLK VVGGDISAIP GLSEAIEETI RDAVEDSITW PVRKVIPIIP GDYSDLELKP VGMLEVKLVQ AKNLTNKDLV GKSDPFAKMF IRPLREKTKR
301: SKTINNDLNP IWNEHFEFVV EDASTQHLVV RIYDDEGVQA SELIGCAQIR LCELEPGKVK DVWLKLVKDL EIQRDTKNRG EVHLELLYIP YGSGNGIVNP
401: FVTSSMTSLE RVLKNDTTDE ENASSRKRKD VIVRGVLSVT VISAEEIPIQ DLMGKADPYV VLSMKKSGAK SKTRVVNDSL NPVWNQTFDF VVEDGLHDML
501: VLEVWDHDTF GKDYIGRCIL TLTRVIMEEE YKDWYPLDES KTGKLQLHLK WMAQSIYRDS

Arabidopsis Description

SYT5Synaptotagmin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L706]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.