Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400068835 | Potato | extracellular | 10.23 | 82.86 |
| PGSC0003DMT400054286 | Potato | extracellular | 10.23 | 82.86 |
| Solyc07g007680.2.1 | Tomato | plastid | 77.78 | 78.47 |
| PGSC0003DMT400020478 | Potato | cytosol | 58.91 | 78.4 |
| PGSC0003DMT400078832 | Potato | cytosol | 36.16 | 77.36 |
| KRH03623 | Soybean | endoplasmic reticulum | 80.78 | 77.1 |
| Solyc12g009790.1.1 | Tomato | endoplasmic reticulum | 76.54 | 76.81 |
| VIT_04s0008g05740.t01 | Wine grape | endoplasmic reticulum | 75.84 | 75.44 |
| PGSC0003DMT400078829 | Potato | extracellular, plasma membrane | 34.22 | 75.19 |
| Bra015431.1-P | Field mustard | endoplasmic reticulum, extracellular | 74.07 | 75.13 |
| CDY47278 | Canola | endoplasmic reticulum, extracellular | 74.07 | 75.13 |
| PGSC0003DMT400046490 | Potato | cytosol | 11.11 | 75.0 |
| AT1G05500.1 | Thale cress | endoplasmic reticulum, extracellular | 73.55 | 74.46 |
| GSMUA_Achr1P26040_001 | Banana | endoplasmic reticulum, golgi | 73.37 | 74.42 |
| CDY15543 | Canola | endoplasmic reticulum, extracellular | 74.6 | 74.21 |
| CDY10116 | Canola | endoplasmic reticulum, extracellular | 74.07 | 73.04 |
| CDX86575 | Canola | endoplasmic reticulum, extracellular | 74.25 | 72.96 |
| GSMUA_Achr7P05380_001 | Banana | endoplasmic reticulum | 74.07 | 72.04 |
| PGSC0003DMT400041534 | Potato | cytosol | 18.17 | 71.03 |
| Zm00001d002090_P001 | Maize | endoplasmic reticulum, extracellular, plastid | 71.43 | 70.31 |
| EES11541 | Sorghum | extracellular, golgi | 70.37 | 69.27 |
| TraesCS2A01G517200.1 | Wheat | endoplasmic reticulum, extracellular, plastid | 68.25 | 67.89 |
| TraesCS2D01G518800.1 | Wheat | endoplasmic reticulum, extracellular, plastid | 68.25 | 67.89 |
| TraesCS2B01G545700.3 | Wheat | endoplasmic reticulum, extracellular, plastid | 68.25 | 67.89 |
| HORVU2Hr1G114590.1 | Barley | endoplasmic reticulum, extracellular, plastid | 68.08 | 67.72 |
| GSMUA_Achr3P19840_001 | Banana | endoplasmic reticulum, golgi, plastid | 70.55 | 67.0 |
| Bra030612.1-P | Field mustard | endoplasmic reticulum, extracellular | 73.9 | 65.67 |
| Solyc12g009700.1.1 | Tomato | extracellular, plasma membrane | 34.39 | 63.73 |
| Solyc12g009760.1.1 | Tomato | extracellular | 13.76 | 62.9 |
| VIT_18s0001g14590.t01 | Wine grape | cytosol | 6.17 | 38.04 |
| VIT_09s0018g01580.t01 | Wine grape | cytosol | 6.0 | 36.96 |
| VIT_15s0048g01410.t01 | Wine grape | endoplasmic reticulum, extracellular | 32.28 | 35.67 |
| VIT_10s0003g03240.t01 | Wine grape | mitochondrion | 7.23 | 33.88 |
| VIT_12s0055g01250.t01 | Wine grape | cytosol, mitochondrion | 7.23 | 33.88 |
| VIT_18s0001g14630.t01 | Wine grape | endoplasmic reticulum, extracellular | 28.04 | 29.5 |
| VIT_08s0040g01740.t01 | Wine grape | endoplasmic reticulum, extracellular | 28.04 | 29.07 |
| VIT_03s0038g02330.t01 | Wine grape | endoplasmic reticulum | 27.34 | 28.76 |
| VIT_13s0019g04450.t01 | Wine grape | endoplasmic reticulum, extracellular | 27.16 | 28.31 |
Protein Annotations
| EntrezGene:100247088 | wikigene:100247088 | Gene3D:2.60.40.150 | MapMan:35.1 | InterPro:C2_dom | InterPro:C2_domain_sf |
| ProteinID:CBI25543 | ProteinID:CBI25543.3 | UniProt:D7T4W1 | EMBL:FN595515 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006869 | GO:GO:0008150 | GO:GO:0008289 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:IPR000008 | InterPro:IPR031468 | InterPro:IPR035892 | EntrezGene:LOC100247088 | wikigene:LOC100247088 |
| PFAM:PF00168 | PFAM:PF17047 | PRINTS:PR00360 | PFscan:PS50004 | PFscan:PS51847 | PANTHER:PTHR10774 |
| PANTHER:PTHR10774:SF166 | SMART:SM00239 | InterPro:SMP_LBD | SUPFAM:SSF49562 | InterPro:Synaptotagmin_SMP | TMHMM:TMhelix |
| UniParc:UPI000198448E | ArrayExpress:VIT_11s0118g00230 | EnsemblPlantsGene:VIT_11s0118g00230 | EnsemblPlants:VIT_11s0118g00230.t01 | unigene:Vvi.1090 | RefSeq:XP_002265034 |
| RefSeq:XP_002265034.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr11:+:5843896..5869373
Molecular Weight (calculated)
64115.1 Da
IEP (calculated)
6.532
GRAVY (calculated)
-0.047
Length
567 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFFLGLVIG ITVGIGLIVL FVRSENIRSK QRSALATTVA ALARMTVEDS RKILPSKFYP SWVVFSQRQK LTWLNHHLTK IWPYVNEAAS ELIRTNVEPI
101: LEQYRPMILS SLKFSRFTLG TVSPQFTGVS IIEDGADCIT LELELQWDGN PSIILDINTR LGVALPVQVK NIGFTGVFRL MFKPLVDEFP CFGAVCFSLR
201: QKKKLDLTLK VVGGDISAIP GISDAIKDTI DNAIEDSIMW PVRKVVPILP GDYSDLELKP VGTLEVKLVQ AKELTNKDII GKSDPFAVLY VRPLPNRMKT
301: SKTINNQLNP VWNEHFEFIV EDASTQHLVV KIYDNEGLQA SELIGCAQVQ LRELEPGKVK DAWWKLVKDL EVQRDTKNRG QVHLELLYVP FGMENGFTNP
401: FAPKFSMTSL EKVLKNGVDG TEVAENGNAV MQKKREVIVR GVLSITVISA EDLPVVDLMG KADPYVVLIL KKSEIRNKTR VVNDSLNPVW NQTFDFVVED
501: GLHDMLILEV WDHDTFGKDY MGRCILTLTR VILEGEYKET FQLDEAKSGR LNLHLKWMPQ PIYRDRE
101: LEQYRPMILS SLKFSRFTLG TVSPQFTGVS IIEDGADCIT LELELQWDGN PSIILDINTR LGVALPVQVK NIGFTGVFRL MFKPLVDEFP CFGAVCFSLR
201: QKKKLDLTLK VVGGDISAIP GISDAIKDTI DNAIEDSIMW PVRKVVPILP GDYSDLELKP VGTLEVKLVQ AKELTNKDII GKSDPFAVLY VRPLPNRMKT
301: SKTINNQLNP VWNEHFEFIV EDASTQHLVV KIYDNEGLQA SELIGCAQVQ LRELEPGKVK DAWWKLVKDL EVQRDTKNRG QVHLELLYVP FGMENGFTNP
401: FAPKFSMTSL EKVLKNGVDG TEVAENGNAV MQKKREVIVR GVLSITVISA EDLPVVDLMG KADPYVVLIL KKSEIRNKTR VVNDSLNPVW NQTFDFVVED
501: GLHDMLILEV WDHDTFGKDY MGRCILTLTR VILEGEYKET FQLDEAKSGR LNLHLKWMPQ PIYRDRE
001: MGFIVGVVIG LLVGIAIIIG FVKLENSRSK LRSELANTVA AFARMTVEDS RKLLPPEFYP SWVVFSERQK LTWLNHHLTK IWPYVDEAAS ELIKASVEPV
101: LEQYRPAIVA SLTFSKLTLG TVAPQFTGVS VIDGDKNGIT LELDMQWDGN PNIVLGVKTL VGVSLPIQVK NIGFTGVFRL IFRPLVEDFP CFGAVSVSLR
201: EKKKLDFTLK VVGGDISAIP GLSEAIEETI RDAVEDSITW PVRKVIPIIP GDYSDLELKP VGMLEVKLVQ AKNLTNKDLV GKSDPFAKMF IRPLREKTKR
301: SKTINNDLNP IWNEHFEFVV EDASTQHLVV RIYDDEGVQA SELIGCAQIR LCELEPGKVK DVWLKLVKDL EIQRDTKNRG EVHLELLYIP YGSGNGIVNP
401: FVTSSMTSLE RVLKNDTTDE ENASSRKRKD VIVRGVLSVT VISAEEIPIQ DLMGKADPYV VLSMKKSGAK SKTRVVNDSL NPVWNQTFDF VVEDGLHDML
501: VLEVWDHDTF GKDYIGRCIL TLTRVIMEEE YKDWYPLDES KTGKLQLHLK WMAQSIYRDS
101: LEQYRPAIVA SLTFSKLTLG TVAPQFTGVS VIDGDKNGIT LELDMQWDGN PNIVLGVKTL VGVSLPIQVK NIGFTGVFRL IFRPLVEDFP CFGAVSVSLR
201: EKKKLDFTLK VVGGDISAIP GLSEAIEETI RDAVEDSITW PVRKVIPIIP GDYSDLELKP VGMLEVKLVQ AKNLTNKDLV GKSDPFAKMF IRPLREKTKR
301: SKTINNDLNP IWNEHFEFVV EDASTQHLVV RIYDDEGVQA SELIGCAQIR LCELEPGKVK DVWLKLVKDL EIQRDTKNRG EVHLELLYIP YGSGNGIVNP
401: FVTSSMTSLE RVLKNDTTDE ENASSRKRKD VIVRGVLSVT VISAEEIPIQ DLMGKADPYV VLSMKKSGAK SKTRVVNDSL NPVWNQTFDF VVEDGLHDML
501: VLEVWDHDTF GKDYIGRCIL TLTRVIMEEE YKDWYPLDES KTGKLQLHLK WMAQSIYRDS
Arabidopsis Description
SYT5Synaptotagmin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L706]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.