Factsheet for VIT_04s0008g05740.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 2
plastid 2
extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0118g00230.t01	Wine grape	endoplasmic reticulum, extracellular	75.44	75.84
PGSC0003DMT400036226	Potato	endoplasmic reticulum	72.63	75.0
KRH52409	Soybean	endoplasmic reticulum, extracellular	74.74	74.22
GSMUA_Achr1P26040_001	Banana	endoplasmic reticulum, golgi	71.75	73.17
CDX85729	Canola	endoplasmic reticulum, extracellular, plastid	70.35	72.38
CDY51108	Canola	endoplasmic reticulum, extracellular, plastid	70.88	71.89
Bra023307.1-P	Field mustard	endoplasmic reticulum	70.88	71.89
Solyc08g021940.1.1	Tomato	extracellular, plasma membrane	35.79	71.58
GSMUA_Achr7P05380_001	Banana	endoplasmic reticulum	71.93	70.33
Zm00001d002090_P001	Maize	endoplasmic reticulum, extracellular, plastid	68.95	68.23
EES11541	Sorghum	extracellular, golgi	68.42	67.71
TraesCS2B01G545700.3	Wheat	endoplasmic reticulum, extracellular, plastid	67.54	67.54
TraesCS2D01G518800.1	Wheat	endoplasmic reticulum, extracellular, plastid	67.54	67.54
TraesCS2A01G517200.1	Wheat	endoplasmic reticulum, extracellular, plastid	67.37	67.37
HORVU2Hr1G114590.1	Barley	endoplasmic reticulum, extracellular, plastid	66.84	66.84
GSMUA_Achr3P19840_001	Banana	endoplasmic reticulum, golgi, plastid	69.47	66.33
VIT_18s0001g14590.t01	Wine grape	cytosol	6.14	38.04
VIT_09s0018g01580.t01	Wine grape	cytosol	5.96	36.96
VIT_15s0048g01410.t01	Wine grape	endoplasmic reticulum, extracellular	32.11	35.67
VIT_10s0003g03240.t01	Wine grape	mitochondrion	7.02	33.06
VIT_12s0055g01250.t01	Wine grape	cytosol, mitochondrion	7.02	33.06
VIT_18s0001g14630.t01	Wine grape	endoplasmic reticulum, extracellular	28.42	30.06
VIT_13s0019g04450.t01	Wine grape	endoplasmic reticulum, extracellular	28.25	29.6
VIT_03s0038g02330.t01	Wine grape	endoplasmic reticulum	27.72	29.31
VIT_08s0040g01740.t01	Wine grape	endoplasmic reticulum, extracellular	28.07	29.25

Protein Annotations

EntrezGene:100242229	wikigene:100242229	Gene3D:2.60.40.150	MapMan:35.1	InterPro:C2_dom	InterPro:C2_domain_sf
ProteinID:CBI21067	ProteinID:CBI21067.3	UniProt:D7SUW8	EMBL:FN595231	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0006810	GO:GO:0006869	GO:GO:0008150	GO:GO:0008289	GO:GO:0016020
GO:GO:0016021	InterPro:IPR000008	InterPro:IPR031468	InterPro:IPR035892	EntrezGene:LOC100242229	wikigene:LOC100242229
PFAM:PF00168	PFAM:PF17047	PRINTS:PR00360	PFscan:PS50004	PFscan:PS51847	PANTHER:PTHR10774
PANTHER:PTHR10774:SF162	SMART:SM00239	InterPro:SMP_LBD	SUPFAM:SSF49562	InterPro:Synaptotagmin_SMP	TMHMM:TMhelix
UniParc:UPI000198311D	ArrayExpress:VIT_04s0008g05740	EnsemblPlantsGene:VIT_04s0008g05740	EnsemblPlants:VIT_04s0008g05740.t01	RefSeq:XP_002285251	RefSeq:XP_002285251.1
RefSeq:XP_003631760	RefSeq:XP_003631760.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:+:5239396..5245850

Molecular Weight (calculated)

64316.2 Da

IEP (calculated)

6.720

GRAVY (calculated)

-0.044

Length

570 amino acids

Sequence
(BLAST)

001: MSFFFGIVIG IACGIAVVVV FARLANLRSK SRCDLATTVA AFARMTVQDS RKILPPQFYP SWVVFSQQQK LSYMNGCLTW LNSHLRKIWP YVDEAASELI
101: RSNVEPILEQ YRPVILSALK FSKLTLGTVA PQFTGVSILE GEAGEVSMEL EMQWDGNPNI VLDIKTRVGV GLPVQVKNIG FTGVFRLIFK PMVEEFPCFG
201: AVCYSLREKK NLDFKLKVVG GDITALPGIS DAIEETILDA IEDSITWPVR KIVPIIPGDY SDLELKPVGT LEVKLVQARD LTNKDLIGKS DPYAVLFVRP
301: IRDRMKTSKT INNELNPIWN EHFEFIVEDA STQHLTVRIF DDEGVQASEL IGCAQVRLKD LEPGKVKDVW LKLVKDLDVQ RDKKYRGEVR LELLYCPFGM
401: ESVFTNPFRP NLLTSLEKVL KADGTEADDI KKSHSLKKRD IIVRGVLSVT VISAENLPVV DLIGKADPYV ELTMKKSNTK HRTRVVNNSL NPIWNQTFDF
501: VVEDGLHDML ILDVWDHDTF GKDKIGRCIF TLTRVILEGE FRDNFPLEGA KSGSLNLHLK WSPQPIFRDT

Best Arabidopsis Sequence Match ( AT1G05500.1 )
(BLAST)

001: MGFIVGVVIG LLVGIAIIIG FVKLENSRSK LRSELANTVA AFARMTVEDS RKLLPPEFYP SWVVFSERQK LTWLNHHLTK IWPYVDEAAS ELIKASVEPV
101: LEQYRPAIVA SLTFSKLTLG TVAPQFTGVS VIDGDKNGIT LELDMQWDGN PNIVLGVKTL VGVSLPIQVK NIGFTGVFRL IFRPLVEDFP CFGAVSVSLR
201: EKKKLDFTLK VVGGDISAIP GLSEAIEETI RDAVEDSITW PVRKVIPIIP GDYSDLELKP VGMLEVKLVQ AKNLTNKDLV GKSDPFAKMF IRPLREKTKR
301: SKTINNDLNP IWNEHFEFVV EDASTQHLVV RIYDDEGVQA SELIGCAQIR LCELEPGKVK DVWLKLVKDL EIQRDTKNRG EVHLELLYIP YGSGNGIVNP
401: FVTSSMTSLE RVLKNDTTDE ENASSRKRKD VIVRGVLSVT VISAEEIPIQ DLMGKADPYV VLSMKKSGAK SKTRVVNDSL NPVWNQTFDF VVEDGLHDML
501: VLEVWDHDTF GKDYIGRCIL TLTRVIMEEE YKDWYPLDES KTGKLQLHLK WMAQSIYRDS

Arabidopsis Description

SYT5Synaptotagmin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L706]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.