Factsheet for VIT_18s0001g14590.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0018g01580.t01	Wine grape	cytosol	94.57	94.57
VIT_10s0003g03240.t01	Wine grape	mitochondrion	98.91	75.21
VIT_12s0055g01250.t01	Wine grape	cytosol, mitochondrion	96.74	73.55
VIT_08s0040g01740.t01	Wine grape	endoplasmic reticulum, extracellular	98.91	16.64
GSMUA_Achr4P18220_001	Banana	cytosol, endoplasmic reticulum, golgi, mitochondrion	76.09	14.86
VIT_13s0019g04450.t01	Wine grape	endoplasmic reticulum, extracellular	78.26	13.24
Zm00001d014499_P004	Maize	endoplasmic reticulum, extracellular	68.48	12.68
EER88839	Sorghum	endoplasmic reticulum, extracellular	67.39	11.57
Solyc09g007860.2.1	Tomato	endoplasmic reticulum	68.48	11.56
PGSC0003DMT400055528	Potato	mitochondrion	68.48	11.56
Os06t0685300-00	Rice	endoplasmic reticulum, extracellular	67.39	11.48
TraesCS7A01G447300.1	Wheat	extracellular, vacuole	66.3	11.32
TraesCS7D01G437000.1	Wheat	extracellular, vacuole	66.3	11.32
HORVU7Hr1G101310.22	Barley	extracellular, golgi	66.3	11.32
TraesCS7B01G347000.3	Wheat	extracellular, golgi	67.39	10.75
VIT_18s0001g14630.t01	Wine grape	endoplasmic reticulum, extracellular	60.87	10.39
VIT_03s0038g02330.t01	Wine grape	endoplasmic reticulum	57.61	9.83
VIT_15s0048g01410.t01	Wine grape	endoplasmic reticulum, extracellular	34.78	6.24
VIT_11s0118g00230.t01	Wine grape	endoplasmic reticulum, extracellular	38.04	6.17
VIT_04s0008g05740.t01	Wine grape	endoplasmic reticulum	38.04	6.14
GSMUA_Achr4P18210_001	Banana	extracellular, plasma membrane	0.0	0.0

Protein Annotations

EntrezGene:109121658	Gene3D:2.60.40.150	MapMan:35.1	InterPro:C2_dom	InterPro:C2_domain_sf	ProteinID:CCB46050
ProteinID:CCB46050.1	UniProt:F6H1M2	EMBL:FN595227	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	InterPro:IPR000008	InterPro:IPR035892	PFAM:PF00168	PRINTS:PR00360
PFscan:PS50004	PANTHER:PTHR10774	PANTHER:PTHR10774:SF62	SMART:SM00239	SUPFAM:SSF49562	UniParc:UPI000210A061
ArrayExpress:VIT_18s0001g14590	EnsemblPlantsGene:VIT_18s0001g14590	EnsemblPlants:VIT_18s0001g14590.t01	RefSeq:XP_019071988.1	SEG:seg	:

Description

No Description!

Coordinates

chr18:-:12634521..12635111

Molecular Weight (calculated)

10489.2 Da

IEP (calculated)

10.357

GRAVY (calculated)

-0.055

Length

92 amino acids

Sequence
(BLAST)

1: MPILDALVAP IKKLVGLLHV KVVRARKLLK MDILGASDPY VKLSLSGERL PAKKTSIKMK TLDPEWNEDF KLIVKDPKSQ VLQLHVYDWE KV

Best Arabidopsis Sequence Match ( AT5G04220.1 )
(BLAST)

001: MILLSETIKR QVSSMYHWPQ VLEIPILDSS TASVKKPVGL LHVSILRARN LLKKDLLGTS DPYVKLSLTG EKLPAKKTTI KKRNLNPEWN EHFKLIVKDP
101: NSQVLQLEVF DWDKVGGHDR LGMQMIPLQK INPGERKEFN LDLIKNSNVV MDSGDKKKRG RLEVDLRYVP FREESIKRRK ESREEKSSED DDFLSQAGLL
201: SVAVQSAKDV EGKKKHSNPY AVVLFRGEKK KTKMLKKTRD PRWNEEFQFT LEEPPVKESI RVEVMSKGTG FHFRSKEELG HVDINLDDVV DNGRINQKYH
301: LINSRNGIIH IEIRWTTS

Arabidopsis Description

SYT3Synaptotagmin-3 [Source:UniProtKB/Swiss-Prot;Acc:Q7XA06]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.