Factsheet for VIT_12s0055g01250.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g14590.t01	Wine grape	cytosol	73.55	96.74
VIT_10s0003g03240.t01	Wine grape	mitochondrion	96.69	96.69
VIT_09s0018g01580.t01	Wine grape	cytosol	71.07	93.48
VIT_08s0040g01740.t01	Wine grape	endoplasmic reticulum, extracellular	92.56	20.48
GSMUA_Achr4P18220_001	Banana	cytosol, endoplasmic reticulum, golgi, mitochondrion	66.12	16.99
VIT_13s0019g04450.t01	Wine grape	endoplasmic reticulum, extracellular	73.55	16.36
Zm00001d014499_P004	Maize	endoplasmic reticulum, extracellular	59.5	14.49
Solyc09g007860.2.1	Tomato	endoplasmic reticulum	64.46	14.31
PGSC0003DMT400055528	Potato	mitochondrion	64.46	14.31
TraesCS7D01G437000.1	Wheat	extracellular, vacuole	61.16	13.73
HORVU7Hr1G101310.22	Barley	extracellular, golgi	60.33	13.54
EER88839	Sorghum	endoplasmic reticulum, extracellular	59.5	13.43
TraesCS7A01G447300.1	Wheat	extracellular, vacuole	59.5	13.36
Os06t0685300-00	Rice	endoplasmic reticulum, extracellular	59.5	13.33
VIT_18s0001g14630.t01	Wine grape	endoplasmic reticulum, extracellular	58.68	13.17
TraesCS7B01G347000.3	Wheat	extracellular, golgi	61.16	12.82
VIT_03s0038g02330.t01	Wine grape	endoplasmic reticulum	55.37	12.43
VIT_11s0118g00230.t01	Wine grape	endoplasmic reticulum, extracellular	33.88	7.23
VIT_15s0048g01410.t01	Wine grape	endoplasmic reticulum, extracellular	29.75	7.02
VIT_04s0008g05740.t01	Wine grape	endoplasmic reticulum	33.06	7.02
GSMUA_Achr4P18210_001	Banana	extracellular, plasma membrane	0.83	0.7

Protein Annotations

Gene3D:2.60.40.150	MapMan:35.1	InterPro:C2_dom	InterPro:C2_domain_sf	ProteinID:CBI20075	ProteinID:CBI20075.3
UniProt:D7STG1	EMBL:FN595228	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	InterPro:IPR000008	InterPro:IPR035892	PFAM:PF00168	PRINTS:PR00360	PFscan:PS50004
PANTHER:PTHR10774	PANTHER:PTHR10774:SF62	SMART:SM00239	SUPFAM:SSF49562	UniParc:UPI0001BE19E7	ArrayExpress:VIT_12s0055g01250
EnsemblPlantsGene:VIT_12s0055g01250	EnsemblPlants:VIT_12s0055g01250.t01	:	:	:	:

Description

No Description!

Coordinates

chr12:-:15200513..15201190

Molecular Weight (calculated)

14011.7 Da

IEP (calculated)

10.248

GRAVY (calculated)

0.030

Length

121 amino acids

Sequence
(BLAST)

001: MCLFTFFVCQ QKTIRRQVAS LYLCPQTLEM PILDALVAPI KKPVGLLHVK VVRARKLLKM DILGAFDPYV KLSLSGERLP AKKTSIKMKT LDPEWNEDFK
101: LIVKDPKSQV LRLHVYDWEK V

Best Arabidopsis Sequence Match ( AT5G04220.1 )
(BLAST)

001: MILLSETIKR QVSSMYHWPQ VLEIPILDSS TASVKKPVGL LHVSILRARN LLKKDLLGTS DPYVKLSLTG EKLPAKKTTI KKRNLNPEWN EHFKLIVKDP
101: NSQVLQLEVF DWDKVGGHDR LGMQMIPLQK INPGERKEFN LDLIKNSNVV MDSGDKKKRG RLEVDLRYVP FREESIKRRK ESREEKSSED DDFLSQAGLL
201: SVAVQSAKDV EGKKKHSNPY AVVLFRGEKK KTKMLKKTRD PRWNEEFQFT LEEPPVKESI RVEVMSKGTG FHFRSKEELG HVDINLDDVV DNGRINQKYH
301: LINSRNGIIH IEIRWTTS

Arabidopsis Description

SYT3Synaptotagmin-3 [Source:UniProtKB/Swiss-Prot;Acc:Q7XA06]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.