Factsheet for VIT_08s0040g01740.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

cytosol 4
extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g14590.t01	Wine grape	cytosol	16.64	98.91
VIT_09s0018g01580.t01	Wine grape	cytosol	16.09	95.65
VIT_10s0003g03240.t01	Wine grape	mitochondrion	20.66	93.39
VIT_12s0055g01250.t01	Wine grape	cytosol, mitochondrion	20.48	92.56
VIT_13s0019g04450.t01	Wine grape	endoplasmic reticulum, extracellular	70.02	70.4
PGSC0003DMT400055528	Potato	mitochondrion	61.97	62.2
GSMUA_Achr4P18210_001	Banana	extracellular, plasma membrane	16.09	61.97
Solyc09g007860.2.1	Tomato	endoplasmic reticulum	61.61	61.83
GSMUA_Achr4P18220_001	Banana	cytosol, endoplasmic reticulum, golgi, mitochondrion	50.46	58.6
Os06t0685300-00	Rice	endoplasmic reticulum, extracellular	57.77	58.52
EER88839	Sorghum	endoplasmic reticulum, extracellular	55.58	56.72
VIT_18s0001g14630.t01	Wine grape	endoplasmic reticulum, extracellular	55.21	56.03
TraesCS7A01G447300.1	Wheat	extracellular, vacuole	54.66	55.47
VIT_03s0038g02330.t01	Wine grape	endoplasmic reticulum	54.48	55.29
TraesCS7D01G437000.1	Wheat	extracellular, vacuole	54.11	54.92
HORVU7Hr1G101310.22	Barley	extracellular, golgi	53.38	54.17
TraesCS7B01G347000.3	Wheat	extracellular, golgi	54.84	51.99
Zm00001d014499_P004	Maize	endoplasmic reticulum, extracellular	46.62	51.31
VIT_04s0008g05740.t01	Wine grape	endoplasmic reticulum	29.25	28.07
VIT_11s0118g00230.t01	Wine grape	endoplasmic reticulum, extracellular	29.07	28.04
VIT_15s0048g01410.t01	Wine grape	endoplasmic reticulum, extracellular	24.13	25.73

Protein Annotations

EntrezGene:100261834	wikigene:100261834	Gene3D:2.60.40.150	MapMan:5.8.1.2	InterPro:C2_dom	InterPro:C2_domain_sf
ProteinID:CBI32744	ProteinID:CBI32744.3	ncoils:Coil	UniProt:D7TQM4	EMBL:FN596008	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0006810	GO:GO:0006869	GO:GO:0008150	GO:GO:0008289	GO:GO:0016020	GO:GO:0016021
InterPro:IPR000008	InterPro:IPR031468	InterPro:IPR035892	EntrezGene:LOC100261834	wikigene:LOC100261834	PFAM:PF00168
PFAM:PF17047	PRINTS:PR00360	PFscan:PS50004	PFscan:PS51847	PANTHER:PTHR10774	PANTHER:PTHR10774:SF62
SMART:SM00239	InterPro:SMP_LBD	SUPFAM:SSF49562	InterPro:Synaptotagmin_SMP	TMHMM:TMhelix	UniParc:UPI00015CAC89
ArrayExpress:VIT_08s0040g01740	EnsemblPlantsGene:VIT_08s0040g01740	EnsemblPlants:VIT_08s0040g01740.t01	RefSeq:XP_002276374	RefSeq:XP_002276374.2	SEG:seg

Description

No Description!

Coordinates

chr8:+:12864681..12871157

Molecular Weight (calculated)

62165.7 Da

IEP (calculated)

9.355

GRAVY (calculated)

-0.053

Length

547 amino acids

Sequence
(BLAST)

001: MGFVSALLGI IGFGVGIPFG LVLGYFIFIH NEPQDVKVPI IRPLHDLDSD SLLDLLDEMP LWVKTPDYDR ADWLNKFIFD MWPYLDKAIC GIIRSTTEPI
101: FAEYIGKFQI KSIDFETLSL GTLSPIVHGK YSSIKTNEVN ELILEPAIRW AGNPNIILVL KLLSLRITLQ LTDLQISMVP RIVLKPLVPT FPCFASVVVS
201: LMEKPHVDFG LKLLGGDIMA IPGLYQFIQK TIRRQVASLY LWPQTLEMPI LDALVAPIKK PVGLLHVKVV RARKLLKMDI LGASDPYVKL SLSGERLPAK
301: KTSIKMKTLD PEWNEDFKLI VKDPKSQVLQ LHVYDWEKVG MHDKLGMQVV PLRLLTPNMT KQFTLDLLKN TNPNDPHNKK YRGKIVVEMT FNPFKEDSER
401: FSGLLNEHMR NDSGGERATE DVPSSGAGLL LVVIQGAEHV EGKHHNNPYA IILFKGERKN TKLIKKTRDP CWNEEFEFML EEAPVKEKIH IEVMSKRKGF
501: GFSFKESLGH VDIDLIDVVH NGHINKKYNL IRSKHGVIHV GLRWKVT

Best Arabidopsis Sequence Match ( AT5G04220.2 )
(BLAST)

001: MGFFTSVLGI IGFVIGIPIG LILGFFVLIY SQPSHQEYPP ARPLVETSIS VLLDLLPDIP LWMKNPDYER VDWFNKFISY MWPYLDKAVC GIIRSSVQPL
101: FADYIGTFCI ESIEFENLSL GTLPPTVHGV KFYETNEKEL LFEPSIKWAG NPNIVLVLKV LSLRIRVQLV DLQFFAIVRV ALKPLLPTFP CFGMVVVSLM
201: EKPHVDFGLK VLGGDLMSIP GLYRYVQETI KRQVSSMYHW PQVLEIPILD SSTASVKKPV GLLHVSILRA RNLLKKDLLG TSDPYVKLSL TGEKLPAKKT
301: TIKKRNLNPE WNEHFKLIVK DPNSQVLQLE VFDWDKVGGH DRLGMQMIPL QKINPGERKE FNLDLIKNSN VVMDSGDKKK RGRLEVDLRY VPFREESIKR
401: RKESREEKSS EDDDFLSQAG LLSVAVQSAK DVEGKKKHSN PYAVVLFRGE KKKTKMLKKT RDPRWNEEFQ FTLEEPPVKE SIRVEVMSKG TGFHFRSKEE
501: LGHVDINLDD VVDNGRINQK YHLINSRNGI IHIEIRWTTS

Arabidopsis Description

SYT3Synaptotagmin-3 [Source:UniProtKB/Swiss-Prot;Acc:Q7XA06]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.