Factsheet for Os06t0685300-00

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

plastid 2
cytosol 2
extracellular 4
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88839	Sorghum	endoplasmic reticulum, extracellular	82.78	83.4
TraesCS7D01G437000.1	Wheat	extracellular, vacuole	82.04	82.19
TraesCS7A01G447300.1	Wheat	extracellular, vacuole	81.48	81.63
HORVU7Hr1G101310.22	Barley	extracellular, golgi	81.11	81.26
TraesCS7B01G347000.3	Wheat	extracellular, golgi	81.85	76.6
Zm00001d014499_P004	Maize	endoplasmic reticulum, extracellular	68.33	74.25
VIT_18s0001g14590.t01	Wine grape	cytosol	11.48	67.39
VIT_09s0018g01580.t01	Wine grape	cytosol	11.3	66.3
GSMUA_Achr4P18220_001	Banana	cytosol, endoplasmic reticulum, golgi, mitochondrion	53.89	61.78
VIT_12s0055g01250.t01	Wine grape	cytosol, mitochondrion	13.33	59.5
VIT_10s0003g03240.t01	Wine grape	mitochondrion	13.33	59.5
VIT_13s0019g04450.t01	Wine grape	endoplasmic reticulum, extracellular	59.07	58.64
KRG91923	Soybean	endoplasmic reticulum, extracellular, plasma membrane	58.7	58.17
KRH34856	Soybean	extracellular	58.33	57.8
VIT_08s0040g01740.t01	Wine grape	endoplasmic reticulum, extracellular	58.52	57.77
Solyc09g007860.2.1	Tomato	endoplasmic reticulum	55.93	55.41
PGSC0003DMT400055528	Potato	mitochondrion	55.74	55.23
AT5G04220.2	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	55.19	55.19
Os02t0448400-01	Rice	plasma membrane	54.26	54.46
Bra009476.1-P	Field mustard	endoplasmic reticulum, extracellular	54.81	54.41
CDX70250	Canola	endoplasmic reticulum, extracellular	54.63	53.93
CDY41389	Canola	endoplasmic reticulum, extracellular, plasma membrane	54.26	53.86
Os09t0538800-01	Rice	plasma membrane	52.96	53.06
Os01t0819200-00	Rice	endoplasmic reticulum, extracellular	27.78	49.18
KRH15981	Soybean	extracellular	13.52	48.34
KRG95324	Soybean	extracellular, plasma membrane	8.15	36.36
Os01t0819300-01	Rice	cytosol, mitochondrion, plastid	6.48	30.43
Os07t0409100-01	Rice	plasma membrane	23.7	24.85
Os03t0251600-00	Rice	plasma membrane	24.07	24.62
Os04t0644800-01	Rice	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.60.40.150	EntrezGene:4341880	MapMan:5.8.1.2	UniProt:B9FQJ7	ProteinID:BAS99190.1	InterPro:C2_dom
InterPro:C2_domain_sf	ProteinID:EEE66239.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0006810
GO:GO:0006869	GO:GO:0008150	GO:GO:0008289	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000008
InterPro:IPR031468	InterPro:IPR035892	EnsemblPlantsGene:Os06g0685300	EnsemblPlants:Os06t0685300-00	PFAM:PF00168	PFAM:PF17047
PRINTS:PR00360	PFscan:PS50004	PFscan:PS51847	PANTHER:PTHR10774	PANTHER:PTHR10774:SF62	SMART:SM00239
InterPro:SMP_LBD	SUPFAM:SSF49562	InterPro:Synaptotagmin_SMP	TMHMM:TMhelix	UniParc:UPI00019345EE	RefSeq:XP_015641172.1
SEG:seg	:	:	:	:	:

Description

Similar to predicted protein. (Os06t0685300-00)

Coordinates

chr6:+:28558359..28564077

Molecular Weight (calculated)

61908.2 Da

IEP (calculated)

9.835

GRAVY (calculated)

-0.172

Length

540 amino acids

Sequence
(BLAST)

001: MGLVGGLLGF GVGLPLGIAV AYLVYLRLFA PRRRLQDPII RPLRDLDSET LQTTIPDIPL WVKCPDYERV DWINKFIFDM WPFLDKAICN TIRSVIRPTF
101: DQYVGQYGIK SIEFGHLTLG ALPPTFQGIK VYEMREKELV IEPVIRWASI ANVIVKVKVH SFQVSAQLLD LHIMLTPRVT LKPLVPSFPC FANLCVSLME
201: KPHIDFGFKL LGGDVMAIPG LHRFVREKIS KQIANLYHWP KLIQIPILDE ASGATKKPVG ILHVKVIRAM NLLKMDLLGK SDPYVKLRLS GEKLPSKKTS
301: IKMSNLNPEW NEHFRFIVKD PETQILELRM FDWEKVKMHD KLGMQVVPLR LLTPYESKLF TLDLLKSMDP NDPHNKKNRG KLVVELTFDP FRDDSNSTIL
401: MSDGEGNVSV KRDVPPSGGL LLVSVENAED VEGKRHTNPY AVVHFRGERK ETKIIKKTRD PRWNEEFQFM VDEAPVDDKI HIEVVSKRRG LRLPFRNKES
501: LGHVDINLVD VVNNGRINEK YHLINSRNGM VHVEMKWSTV

Best Arabidopsis Sequence Match ( AT1G20080.2 )
(BLAST)

001: MGIISTILGV IGFGFGTTIG IVIGYYLFIY FQSTDVEDPE IKPLVELDSE TIATMFPEIP MWVKNPDFDR IDWLNKLIGH MWPYMDKAIC KMAKSIAKPI
101: IAEQIPNYKI DSVEFEMLTL GSLPPSFQGM KVYATDDKEI IMELSVKWAG NPNIIVVAKA FGLKATVQVI DLQVYATPRI TLKPLVPSFP CFANIFVSLM
201: DKPQVDFGLK LLGADVMAIP GLYRFVQEII KDQVANMYLW PKTLNVQIMD PSKAMKKPVG LLSVKVIKAI KLKKKDLLGG SDPYVKLTLS GDKVPGKKTV
301: VKHSNLNPEW NEEFDLVVKE PESQELQLIV YDWEQVGKHD KIGMNVIQLK DLTPEEPKLM TLELLKSMEP KEPVSEKSRG QLVVEVEYKP FKDDDIPENI
401: DDPNAVEKAP EGTPSTGGLL VVIVHEAEDL EGKYHTNPSV RLLFRGEERK TKRVKKNREP RWDEDFQFPL DEPPINDKLH VEVISSSSRL IHPKETLGYV
501: VINLGDVVSN RRINDKYHLI DSKNGRIQIE LQWRNSS

Arabidopsis Description

SYT2Synaptotagmin-2 [Source:UniProtKB/Swiss-Prot;Acc:B6ETT4]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.