Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 6
- golgi 5
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH34856 | Soybean | extracellular | 93.94 | 93.94 |
| KRH15981 | Soybean | extracellular | 23.12 | 83.44 |
| KRG95324 | Soybean | extracellular, plasma membrane | 17.06 | 76.86 |
| VIT_13s0019g04450.t01 | Wine grape | endoplasmic reticulum, extracellular | 71.38 | 71.51 |
| Bra009476.1-P | Field mustard | endoplasmic reticulum, extracellular | 64.59 | 64.71 |
| AT5G04220.2 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 63.67 | 64.26 |
| CDX70250 | Canola | endoplasmic reticulum, extracellular | 64.22 | 63.99 |
| CDY41389 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 63.67 | 63.79 |
| PGSC0003DMT400055528 | Potato | mitochondrion | 61.83 | 61.83 |
| GSMUA_Achr4P18210_001 | Banana | extracellular, plasma membrane | 15.96 | 61.27 |
| Solyc09g007860.2.1 | Tomato | endoplasmic reticulum | 61.1 | 61.1 |
| Os06t0685300-00 | Rice | endoplasmic reticulum, extracellular | 58.17 | 58.7 |
| TraesCS7A01G447300.1 | Wheat | extracellular, vacuole | 56.51 | 57.14 |
| TraesCS7D01G437000.1 | Wheat | extracellular, vacuole | 56.33 | 56.96 |
| KRH05967 | Soybean | endoplasmic reticulum, extracellular | 55.78 | 56.51 |
| HORVU7Hr1G101310.22 | Barley | extracellular, golgi | 55.78 | 56.4 |
| EER88839 | Sorghum | endoplasmic reticulum, extracellular | 55.41 | 56.34 |
| GSMUA_Achr4P18220_001 | Banana | cytosol, endoplasmic reticulum, golgi, mitochondrion | 48.44 | 56.05 |
| KRH17448 | Soybean | mitochondrion | 55.23 | 55.95 |
| KRH29282 | Soybean | endoplasmic reticulum | 54.68 | 55.29 |
| KRH24304 | Soybean | endoplasmic reticulum | 54.68 | 55.29 |
| KRH51399 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 53.58 | 54.48 |
| TraesCS7B01G347000.3 | Wheat | extracellular, golgi | 56.88 | 53.73 |
| Zm00001d014499_P004 | Maize | endoplasmic reticulum, extracellular | 46.05 | 50.5 |
| KRH48321 | Soybean | endoplasmic reticulum, mitochondrion | 26.42 | 27.48 |
| KRH52409 | Soybean | endoplasmic reticulum, extracellular | 28.81 | 27.35 |
| KRH65210 | Soybean | endoplasmic reticulum, mitochondrion | 26.42 | 26.92 |
| KRH03623 | Soybean | endoplasmic reticulum | 28.81 | 26.43 |
| KRH40562 | Soybean | endoplasmic reticulum | 25.87 | 26.36 |
| KRH00619 | Soybean | mitochondrion, plasma membrane | 26.24 | 26.24 |
| KRH55269 | Soybean | cytosol, plasma membrane | 10.28 | 21.37 |
Protein Annotations
| EntrezGene:100819310 | Gene3D:2.60.40.150 | MapMan:5.8.1.2 | EMBL:ACUP02012715 | InterPro:C2_dom | InterPro:C2_domain_sf |
| EnsemblPlantsGene:GLYMA_20G180600 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0006810 | GO:GO:0006869 | GO:GO:0008150 | GO:GO:0008289 |
| GO:GO:0016020 | GO:GO:0016021 | UniProt:I1NHG6 | InterPro:IPR000008 | InterPro:IPR031468 | InterPro:IPR035892 |
| EnsemblPlants:KRG91923 | ProteinID:KRG91923 | ProteinID:KRG91923.1 | PFAM:PF00168 | PFAM:PF17047 | PRINTS:PR00360 |
| PFscan:PS50004 | PFscan:PS51847 | PANTHER:PTHR10774 | PANTHER:PTHR10774:SF62 | SMART:SM00239 | InterPro:SMP_LBD |
| SUPFAM:SSF49562 | InterPro:Synaptotagmin_SMP | TMHMM:TMhelix | UniParc:UPI000233DB12 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr20:-:41862435..41867871
Molecular Weight (calculated)
62030.1 Da
IEP (calculated)
9.342
GRAVY (calculated)
-0.139
Length
545 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLVSSFLGI LGFAVGIPLG LFVGFFLFVY SETKHVKDPV VRPISELGPN ALQELLPEIP LWVKTPDYER VDWLNKFLLD TWPFLDTAIC KIIRSRAQPI
101: FFEYIGKYQI KAIEFDKLSL GTLPPTVCGI KVLETNGKEL VMEQVIKWAG NPEIVLSVYV ASLKITVQLV DLQIFAAPRV TLRPLVPTFP CFANIVVSLM
201: EKPHVDFGMN VLGGDIMSIP GLYRFVQETI KKQVANLYLW PQTLEIPILD ESSVAIKKPV GILHVNVVRA QKLLKMDLLG TSDPYVKLSL TGDKLPAKKT
301: TVKRKNLNPE WNEKFKLVVK DPQSQVLQLQ VYDWDKVGGH DKLGMQLVPL KVLKAYENKE FTLDLLKDTN LNETPRKKPR GKIVVDLTFV PFKEDSSKFG
401: GPSEGYSRKE SGIDIVSDDE VQEGAGLLSI VIQEAEEVEG DHHNNPFAVL TFRGEKKRTK MMKKTRHPRW NEEFQFMLEE PPQHEKIHIE VMSKRKNFSF
501: LPKKSLGHVE INLRDVVHNG HINDKYHLIN SRNGVMHVEI RWKVV
101: FFEYIGKYQI KAIEFDKLSL GTLPPTVCGI KVLETNGKEL VMEQVIKWAG NPEIVLSVYV ASLKITVQLV DLQIFAAPRV TLRPLVPTFP CFANIVVSLM
201: EKPHVDFGMN VLGGDIMSIP GLYRFVQETI KKQVANLYLW PQTLEIPILD ESSVAIKKPV GILHVNVVRA QKLLKMDLLG TSDPYVKLSL TGDKLPAKKT
301: TVKRKNLNPE WNEKFKLVVK DPQSQVLQLQ VYDWDKVGGH DKLGMQLVPL KVLKAYENKE FTLDLLKDTN LNETPRKKPR GKIVVDLTFV PFKEDSSKFG
401: GPSEGYSRKE SGIDIVSDDE VQEGAGLLSI VIQEAEEVEG DHHNNPFAVL TFRGEKKRTK MMKKTRHPRW NEEFQFMLEE PPQHEKIHIE VMSKRKNFSF
501: LPKKSLGHVE INLRDVVHNG HINDKYHLIN SRNGVMHVEI RWKVV
001: MGFFTSVLGI IGFVIGIPIG LILGFFVLIY SQPSHQEYPP ARPLVETSIS VLLDLLPDIP LWMKNPDYER VDWFNKFISY MWPYLDKAVC GIIRSSVQPL
101: FADYIGTFCI ESIEFENLSL GTLPPTVHGV KFYETNEKEL LFEPSIKWAG NPNIVLVLKV LSLRIRVQLV DLQFFAIVRV ALKPLLPTFP CFGMVVVSLM
201: EKPHVDFGLK VLGGDLMSIP GLYRYVQETI KRQVSSMYHW PQVLEIPILD SSTASVKKPV GLLHVSILRA RNLLKKDLLG TSDPYVKLSL TGEKLPAKKT
301: TIKKRNLNPE WNEHFKLIVK DPNSQVLQLE VFDWDKVGGH DRLGMQMIPL QKINPGERKE FNLDLIKNSN VVMDSGDKKK RGRLEVDLRY VPFREESIKR
401: RKESREEKSS EDDDFLSQAG LLSVAVQSAK DVEGKKKHSN PYAVVLFRGE KKKTKMLKKT RDPRWNEEFQ FTLEEPPVKE SIRVEVMSKG TGFHFRSKEE
501: LGHVDINLDD VVDNGRINQK YHLINSRNGI IHIEIRWTTS
101: FADYIGTFCI ESIEFENLSL GTLPPTVHGV KFYETNEKEL LFEPSIKWAG NPNIVLVLKV LSLRIRVQLV DLQFFAIVRV ALKPLLPTFP CFGMVVVSLM
201: EKPHVDFGLK VLGGDLMSIP GLYRYVQETI KRQVSSMYHW PQVLEIPILD SSTASVKKPV GLLHVSILRA RNLLKKDLLG TSDPYVKLSL TGEKLPAKKT
301: TIKKRNLNPE WNEHFKLIVK DPNSQVLQLE VFDWDKVGGH DRLGMQMIPL QKINPGERKE FNLDLIKNSN VVMDSGDKKK RGRLEVDLRY VPFREESIKR
401: RKESREEKSS EDDDFLSQAG LLSVAVQSAK DVEGKKKHSN PYAVVLFRGE KKKTKMLKKT RDPRWNEEFQ FTLEEPPVKE SIRVEVMSKG TGFHFRSKEE
501: LGHVDINLDD VVDNGRINQK YHLINSRNGI IHIEIRWTTS
Arabidopsis Description
SYT3Synaptotagmin-3 [Source:UniProtKB/Swiss-Prot;Acc:Q7XA06]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.