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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • plastid 1
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 4
  • plasma membrane 4
  • golgi 4
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, plastid, secretory
BaCelLo:plastid
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:cytosol
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:endoplasmic reticulum
 nucleus: 21132161
extracellular: 25724908
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 25724908 doi
VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith
From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH24304 Soybean endoplasmic reticulum 97.22 97.22
KRH51399 Soybean endoplasmic reticulum, extracellular, plasma membrane 83.3 83.77
KRH17448 Soybean mitochondrion 78.48 78.62
VIT_03s0038g02330.t01 Wine grape endoplasmic reticulum 78.48 78.48
PGSC0003DMT400015793 Potato endoplasmic reticulum 78.48 78.48
Solyc01g111520.2.1 Tomato nucleus 78.48 78.48
KRH05967 Soybean endoplasmic reticulum, extracellular 78.29 78.44
GSMUA_Achr4P25570_001 Banana endoplasmic reticulum, extracellular 74.95 75.09
GSMUA_AchrUn_... Banana endoplasmic reticulum 74.03 74.16
CDX81995 Canola endoplasmic reticulum, extracellular 74.4 74.12
Bra031157.1-P Field mustard endoplasmic reticulum, extracellular 74.03 73.75
CDY13846 Canola endoplasmic reticulum, extracellular 74.03 73.75
EER99265 Sorghum endoplasmic reticulum 73.1 73.1
GSMUA_AchrUn_... Banana endoplasmic reticulum 71.61 72.56
TraesCS5A01G330400.1 Wheat golgi 72.36 72.36
HORVU5Hr1G084010.1 Barley endoplasmic reticulum, extracellular 72.36 72.36
Zm00001d006238_P001 Maize plasma membrane 72.36 72.36
OQU92056 Sorghum endoplasmic reticulum 72.17 72.17
TraesCS5D01G336200.1 Wheat endoplasmic reticulum 71.99 71.99
Zm00001d030116_P001 Maize cytosol 39.52 70.3
TraesCS5B01G330600.1 Wheat endoplasmic reticulum 71.8 69.98
AT2G20990.3 Thale cress endoplasmic reticulum, extracellular 74.03 68.91
TraesCS5D01G336100.1 Wheat cytosol 37.29 65.05
TraesCS5B01G330500.1 Wheat cytosol 35.06 64.29
HORVU5Hr1G084020.3 Barley cytosol 25.97 64.22
AT2G21010.1 Thale cress cytosol 30.24 63.67
GSMUA_Achr1P26490_001 Banana cytosol, mitochondrion 61.78 62.71
Zm00001d022625_P006 Maize cytosol, peroxisome, plastid 70.69 59.62
KRH34856 Soybean extracellular 56.4 55.78
KRG91923 Soybean endoplasmic reticulum, extracellular, plasma membrane 55.29 54.68
KRH15981 Soybean extracellular 12.8 45.7
Os01t0819300-01 Rice cytosol, mitochondrion, plastid 9.09 42.61
KRG95324 Soybean extracellular, plasma membrane 8.91 39.67
KRH52409 Soybean endoplasmic reticulum, extracellular 30.43 28.57
KRH03623 Soybean endoplasmic reticulum 30.8 27.95
AT2G21040.1 Thale cress cytosol 12.99 26.82
KRH48321 Soybean endoplasmic reticulum, mitochondrion 24.49 25.19
KRH40562 Soybean endoplasmic reticulum 24.49 24.67
KRH65210 Soybean endoplasmic reticulum, mitochondrion 24.3 24.49
KRH00619 Soybean mitochondrion, plasma membrane 24.68 24.4
KRH55269 Soybean cytosol, plasma membrane 10.76 22.14
Protein Annotations
EntrezGene:100803978Gene3D:2.60.40.150MapMan:5.8.1.2EMBL:ACUP02006797InterPro:C2_domInterPro:C2_domain_sf
EnsemblPlantsGene:GLYMA_11G107300GO:GO:0003674GO:GO:0005488GO:GO:0005575GO:GO:0006810GO:GO:0006869
GO:GO:0008150GO:GO:0008289GO:GO:0016020GO:GO:0016021UniProt:I1LJ17InterPro:IPR000008
InterPro:IPR031468InterPro:IPR035892EnsemblPlants:KRH29282ProteinID:KRH29282ProteinID:KRH29282.1PFAM:PF00168
PFAM:PF17047PRINTS:PR00360PFscan:PS50004PFscan:PS51847PANTHER:PTHR10774PANTHER:PTHR10774:SF50
SMART:SM00239InterPro:SMP_LBDSUPFAM:SSF49562InterPro:Synaptotagmin_SMPTMHMM:TMhelixUniParc:UPI000233C9A1
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr11:-:8182039..8188426
Molecular Weight (calculated)
61723.2 Da
IEP (calculated)
6.696
GRAVY (calculated)
-0.308
Length
539 amino acids
Sequence
(BLAST)
001: MGFFGTILGF LGFGVGISIG LVAGYFLFIY FQPTNVEDPE IKPLAEQEQE TLQRMFPEIP LWIKNPDFDR LDWLNKFVEY MWPYLDKAIC KTAKNIAKPI
101: IAEQIPKYKI DSVEFETLTL GSLPPTFQGM KVYVTDEKEL IMEPSVKWAA NPNVTVSVKA FGLKATVQVV DLQVFLLPRI TLKPLVPSFP CFANIYVSLM
201: EKPHVDFGLK LIGADLMSIP GVYRIVQELI KDQVANMYLW PKTLEVQVLD MSKALKRPVG ILHVKVLQAI KLKKKDLLGA SDPYVKLKLT EDKLPSKKTT
301: VKHKNLNPEW NEEFNMVVKD PDSQVLEINV YDWEQVGKHD KMGMNVIPLK EVSPEETKRF SLDLLKNMDP NDVQNEKSRG QIVVELTYKP FKEEDLGKGF
401: EETQTVPKAP EGTPAGGGLL VVIVHEAQDV EGKYHTNPHV RLIFRGEEKK TKRIKKNRDP RWEDEFQFMV EEPPTNDRLH VEVVSTSSRN LLHQKEPLGY
501: IDINLGDVVA NKRINEKYHL IDSKNGRLQI ELQWRTLEA
Best Arabidopsis Sequence Match ( AT2G20990.1 )
(BLAST)
001: MGFFSTILGF CGFGVGISLG LVIGYVLFVY LLPNDVKDPE IRSIADQDPK AMLRMLPEIP LWVKNPDFDR VDWINRFLEY MWPYLDKAIC KTAKNIAKPI
101: IEEQIPKYKI DSVEFETLTL GSLPPTFQGM KVYLTDEKEL IMEPCLKWAA NPNILVAIKA FGLKATVQVV DLQVFAQPRI TLKPLVPSFP CFANIYVSLM
201: EKPHVDFGLK LGGADLMSIP GLYRFVQEQI KDQVANMYLW PKTLVVPILD PAKAFRRPVG IVHVKVVRAV GLRKKDLMGG ADPFVKIKLS EDKIPSKKTT
301: VKHKNLNPEW NEEFKFSVRD PQTQVLEFSV YDWEQVGNPE KMGMNVLALK EMVPDEHKAF TLELRKTLDG GEDGQPPDKY RGKLEVELLY KPFTEEEMPK
401: GFEETQAVQK APEGTPAAGG MLVVIVHSAE DVEGKHHTNP YVRIYFKGEE RKTKHVKKNR DPRWNEEFTF MLEEPPVREK LHVEVLSTSS RIGLLHPKET
501: LGYVDIPVVD VVNNKRMNQK FHLIDSKNGK IQIELEWRTA S
Arabidopsis Description
SYTASynaptotagmin A [Source:UniProtKB/TrEMBL;Acc:F4IFM6]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.