CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 4
extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99265	Sorghum	endoplasmic reticulum	94.62	94.62
Zm00001d030116_P001	Maize	cytosol	53.06	94.39
Os09t0538800-01	Rice	plasma membrane	89.98	89.98
TraesCS5D01G336200.1	Wheat	endoplasmic reticulum	86.83	86.83
HORVU5Hr1G084010.1	Barley	endoplasmic reticulum, extracellular	86.09	86.09
TraesCS5A01G330400.1	Wheat	golgi	85.9	85.9
TraesCS5B01G330600.1	Wheat	endoplasmic reticulum	86.83	84.63
TraesCS5D01G336100.1	Wheat	cytosol	45.64	79.61
TraesCS5B01G330500.1	Wheat	cytosol	43.23	79.25
Os01t0819200-00	Rice	endoplasmic reticulum, extracellular	43.78	77.38
HORVU5Hr1G084020.3	Barley	cytosol	30.24	74.77
VIT_18s0001g14630.t01	Wine grape	endoplasmic reticulum, extracellular	74.21	74.21
PGSC0003DMT400015793	Potato	endoplasmic reticulum	73.65	73.65
Solyc01g111520.2.1	Tomato	nucleus	73.1	73.1
KRH29282	Soybean	endoplasmic reticulum	72.17	72.17
VIT_03s0038g02330.t01	Wine grape	endoplasmic reticulum	71.99	71.99
KRH05967	Soybean	endoplasmic reticulum, extracellular	71.24	71.38
KRH24304	Soybean	endoplasmic reticulum	71.24	71.24
KRH17448	Soybean	mitochondrion	70.69	70.82
KRH51399	Soybean	endoplasmic reticulum, extracellular, plasma membrane	69.76	70.15
PGSC0003DMT400075422	Potato	endoplasmic reticulum, extracellular	69.76	69.76
Solyc12g089330.1.1	Tomato	endoplasmic reticulum, extracellular	67.35	69.14
Bra031157.1-P	Field mustard	endoplasmic reticulum, extracellular	68.65	68.39
CDY13846	Canola	endoplasmic reticulum, extracellular	68.65	68.39
CDX81995	Canola	endoplasmic reticulum, extracellular	68.65	68.39
AT1G20080.3	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	67.72	67.97
CDY43415	Canola	endoplasmic reticulum, extracellular	67.72	67.84
CDY54339	Canola	endoplasmic reticulum, extracellular	68.46	67.21
Bra016478.1-P	Field mustard	endoplasmic reticulum, extracellular	63.27	66.99
CDY62938	Canola	endoplasmic reticulum, extracellular	68.09	66.85
CDY57593	Canola	endoplasmic reticulum, extracellular	67.53	65.94
Bra012209.1-P	Field mustard	cytosol	46.94	65.54
AT2G20990.3	Thale cress	endoplasmic reticulum, extracellular	68.83	64.08
AT2G21010.1	Thale cress	cytosol	28.2	59.38
EER88839	Sorghum	endoplasmic reticulum, extracellular	51.95	52.24
KXG36798	Sorghum	cytosol	28.2	30.34
EES11541	Sorghum	extracellular, golgi	28.94	27.08
EER96263	Sorghum	mitochondrion, plasma membrane	24.68	26.18
AT2G21040.1	Thale cress	cytosol	12.62	26.05
EER93061	Sorghum	endoplasmic reticulum, mitochondrion	23.75	25.4
EER92549	Sorghum	endoplasmic reticulum, extracellular	23.75	25.05

Protein Annotations

Gene3D:2.60.40.150	MapMan:5.8.1.2	EntrezGene:8086287	InterPro:C2_dom	InterPro:C2_domain_sf	UniProt:C5WQN9
ProteinID:EER91867.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0006810	GO:GO:0006869
GO:GO:0008150	GO:GO:0008289	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000008	InterPro:IPR031468
InterPro:IPR035892	EnsemblPlants:OQU92056	ProteinID:OQU92056	ProteinID:OQU92056.1	ProteinID:OQU92057.1	PFAM:PF00168
PFAM:PF17047	PRINTS:PR00360	PFscan:PS50004	PFscan:PS51847	PANTHER:PTHR10774	PANTHER:PTHR10774:SF50
SMART:SM00239	InterPro:SMP_LBD	EnsemblPlantsGene:SORBI_3001G283600	SUPFAM:SSF49562	unigene:Sbi.6313	InterPro:Synaptotagmin_SMP
TMHMM:TMhelix	UniParc:UPI0001A8238C	RefSeq:XP_002464869.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:55596114..55606709

Molecular Weight (calculated)

61151.7 Da

IEP (calculated)

6.889

GRAVY (calculated)

-0.229

Length

539 amino acids

Sequence
(BLAST)

001: MGVISTVLGF TGFGFGFSAG IVIGYFLFIY VQPADVKDVK VRPLVEYDSK SLEGILPEIP LWVKNPDYDR IDWLNRFLEL MWPYLDKAIC RTAQDIAKPI
101: IAENTAKYKI DSVEFETLTL GSLPPTFQGM KVYVTEEQEL IMEPCLKWAA NPNVTVVIKA YGLKATVQIV DLQVFALPRI TLKPLVPTFP CFAKILVSLM
201: EKPHVDFGLK ILGADVMAIP GLYRFVQETI KKQVAIMYLW PKTLEVPIMD PSKASKKPVG ILLVKVIRAQ NLRKKDLLGK SDPYVKLKMS DDKLPSKKTT
301: VKRSNLNPEW NEDFKFVVTD PENQALEVNV FDWEQVGKHE KMGMNMVLLK DLPPEETKVT TLNLLKTMDP NDVQNEKSRG QLTLELTYKP FKEEDGEIED
401: TEGTNVIEKA PDGTPAGGGL LFVIVHEAKD LEGKHHTNPY AKIIFKGEEK KTKVIKKNRD PRWVDEFEFV CEEPPVNDKL HVEVLSKAPK KGLIYGKETL
501: GYIDVSLADV ISNKRINEKY HLIDSKNGQI QIELQWRTS

Best Arabidopsis Sequence Match ( AT2G20990.1 )
(BLAST)

001: MGFFSTILGF CGFGVGISLG LVIGYVLFVY LLPNDVKDPE IRSIADQDPK AMLRMLPEIP LWVKNPDFDR VDWINRFLEY MWPYLDKAIC KTAKNIAKPI
101: IEEQIPKYKI DSVEFETLTL GSLPPTFQGM KVYLTDEKEL IMEPCLKWAA NPNILVAIKA FGLKATVQVV DLQVFAQPRI TLKPLVPSFP CFANIYVSLM
201: EKPHVDFGLK LGGADLMSIP GLYRFVQEQI KDQVANMYLW PKTLVVPILD PAKAFRRPVG IVHVKVVRAV GLRKKDLMGG ADPFVKIKLS EDKIPSKKTT
301: VKHKNLNPEW NEEFKFSVRD PQTQVLEFSV YDWEQVGNPE KMGMNVLALK EMVPDEHKAF TLELRKTLDG GEDGQPPDKY RGKLEVELLY KPFTEEEMPK
401: GFEETQAVQK APEGTPAAGG MLVVIVHSAE DVEGKHHTNP YVRIYFKGEE RKTKHVKKNR DPRWNEEFTF MLEEPPVREK LHVEVLSTSS RIGLLHPKET
501: LGYVDIPVVD VVNNKRMNQK FHLIDSKNGK IQIELEWRTA S

Arabidopsis Description

SYTASynaptotagmin A [Source:UniProtKB/TrEMBL;Acc:F4IFM6]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.