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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:
  • plastid 1
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 4
  • plasma membrane 4
  • golgi 4
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular
Any Predictor:cytosol, plastid, secretory
BaCelLo:plastid
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:cytosol
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:endoplasmic reticulum
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY13846 Canola endoplasmic reticulum, extracellular 100.0 100.0
AT2G20990.3 Thale cress endoplasmic reticulum, extracellular 93.16 87.05
AT2G21010.1 Thale cress cytosol 39.74 83.98
KRH29282 Soybean endoplasmic reticulum 73.75 74.03
PGSC0003DMT400015793 Potato endoplasmic reticulum 73.57 73.84
Solyc01g111520.2.1 Tomato nucleus 73.38 73.65
VIT_03s0038g02330.t01 Wine grape endoplasmic reticulum 72.64 72.91
KRH24304 Soybean endoplasmic reticulum 72.64 72.91
KRH51399 Soybean endoplasmic reticulum, extracellular, plasma membrane 70.24 70.9
GSMUA_AchrUn_... Banana endoplasmic reticulum 68.76 69.92
GSMUA_Achr4P25570_001 Banana endoplasmic reticulum, extracellular 69.5 69.89
EER99265 Sorghum endoplasmic reticulum 69.13 69.39
GSMUA_AchrUn_... Banana endoplasmic reticulum 68.76 69.14
OQU92056 Sorghum endoplasmic reticulum 68.39 68.65
Zm00001d006238_P001 Maize plasma membrane 68.02 68.27
Bra016478.1-P Field mustard endoplasmic reticulum, extracellular 63.22 67.19
TraesCS5D01G336200.1 Wheat endoplasmic reticulum 66.91 67.16
HORVU5Hr1G084010.1 Barley endoplasmic reticulum, extracellular 66.73 66.98
TraesCS5A01G330400.1 Wheat golgi 66.17 66.42
TraesCS5B01G330600.1 Wheat endoplasmic reticulum 67.1 65.64
Bra012209.1-P Field mustard cytosol 46.4 65.03
Zm00001d030116_P001 Maize cytosol 35.12 62.71
GSMUA_Achr1P26490_001 Banana cytosol, mitochondrion 58.41 59.51
TraesCS5D01G336100.1 Wheat cytosol 32.72 57.28
Zm00001d022625_P006 Maize cytosol, peroxisome, plastid 66.91 56.65
TraesCS5B01G330500.1 Wheat cytosol 30.68 56.46
HORVU5Hr1G084020.3 Barley cytosol 22.18 55.05
Bra009476.1-P Field mustard endoplasmic reticulum, extracellular 51.39 51.1
Os01t0819300-01 Rice cytosol, mitochondrion, plastid 9.06 42.61
AT2G21040.1 Thale cress cytosol 15.53 32.18
Bra015431.1-P Field mustard endoplasmic reticulum, extracellular 31.42 30.41
Bra023307.1-P Field mustard endoplasmic reticulum 30.87 29.72
Bra030612.1-P Field mustard endoplasmic reticulum, extracellular 31.42 26.65
Bra014457.1-P Field mustard endoplasmic reticulum, extracellular 23.48 25.15
Bra003434.1-P Field mustard endoplasmic reticulum, extracellular 23.29 24.95
Protein Annotations
Gene3D:2.60.40.150MapMan:5.8.1.2EnsemblPlantsGene:Bra031157EnsemblPlants:Bra031157.1EnsemblPlants:Bra031157.1-PInterPro:C2_dom
InterPro:C2_domain_sfGO:GO:0003674GO:GO:0005488GO:GO:0005575GO:GO:0006810GO:GO:0006869
GO:GO:0008150GO:GO:0008289GO:GO:0016020GO:GO:0016021InterPro:IPR000008InterPro:IPR031468
InterPro:IPR035892UniProt:M4EQT4PFAM:PF00168PFAM:PF17047PRINTS:PR00360PFscan:PS50004
PFscan:PS51847PANTHER:PTHR10774PANTHER:PTHR10774:SF50SMART:SM00239InterPro:SMP_LBDSUPFAM:SSF49562
InterPro:Synaptotagmin_SMPTMHMM:TMhelixUniParc:UPI00025428EC:::
Description
AT2G20990 (E=2e-304) SYTA, NTMC2TYPE1.1, ATSYTA, NTMC2T1.1, SYT1 | SYTA (SYNAPTOTAGMIN A)
Coordinates
chrA09:-:32260067..32262333
Molecular Weight (calculated)
61846.5 Da
IEP (calculated)
7.708
GRAVY (calculated)
-0.316
Length
541 amino acids
Sequence
(BLAST)
001: MGFFSTILGL CGFGIGISMG LVIGYFLFVY LQPNDVKDPQ IQSIADQDPK SMLRMLPEIP LWVKNPDFDR VDWINKFLEY MWPYLDKAIC KTARNIAKPI
101: IEEQIPKYKI DSVDFETLTL GSLPPTFQGM KVYLTDEKEL IMEPCLKWAA NPNVLVAIKA FGLKATVQVL DLQVFAQPRI TLKPLVPSFP CFASIYVSLM
201: EKPHVDFGLK LGGADLMSIP GLYRFVQEQI KDQVANMYLW PKTLVVPILD PAKAFRRPVG IVHVKVVRAV GLRKKDMMGG ADPYVKIKLS EDKIPSKKTT
301: VKHKNLNPEW NEEHKFSVRD PQTQVLEFSV YDWEQVGKHD KMGMNVLPLK EMVPNEHKSF TLELRKTMEG AEEGVQPDKD RGKLEVELLY KPFTEEEMPK
401: GFEESQSVQK APEGTPAGGG VLAVIVHSAE DVEGKHHTNP YVRIYFKGEE RKTKHVKKNR DPRWEEEFTF MLEEPPVREK LHVEVLSTSS RIGLLHPKET
501: LGYVDIPVVD VVNNKRMNQK FHLIDSKNGK IQIELEWRTT S
Best Arabidopsis Sequence Match ( AT2G20990.1 )
(BLAST)
001: MGFFSTILGF CGFGVGISLG LVIGYVLFVY LLPNDVKDPE IRSIADQDPK AMLRMLPEIP LWVKNPDFDR VDWINRFLEY MWPYLDKAIC KTAKNIAKPI
101: IEEQIPKYKI DSVEFETLTL GSLPPTFQGM KVYLTDEKEL IMEPCLKWAA NPNILVAIKA FGLKATVQVV DLQVFAQPRI TLKPLVPSFP CFANIYVSLM
201: EKPHVDFGLK LGGADLMSIP GLYRFVQEQI KDQVANMYLW PKTLVVPILD PAKAFRRPVG IVHVKVVRAV GLRKKDLMGG ADPFVKIKLS EDKIPSKKTT
301: VKHKNLNPEW NEEFKFSVRD PQTQVLEFSV YDWEQVGNPE KMGMNVLALK EMVPDEHKAF TLELRKTLDG GEDGQPPDKY RGKLEVELLY KPFTEEEMPK
401: GFEETQAVQK APEGTPAAGG MLVVIVHSAE DVEGKHHTNP YVRIYFKGEE RKTKHVKKNR DPRWNEEFTF MLEEPPVREK LHVEVLSTSS RIGLLHPKET
501: LGYVDIPVVD VVNNKRMNQK FHLIDSKNGK IQIELEWRTA S
Arabidopsis Description
SYTASynaptotagmin A [Source:UniProtKB/TrEMBL;Acc:F4IFM6]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.