Factsheet for Bra009476.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

plastid 1
cytosol 3
extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70250	Canola	endoplasmic reticulum, extracellular	99.08	98.54
CDY41389	Canola	endoplasmic reticulum, extracellular, plasma membrane	97.61	97.61
AT5G04220.2	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	87.87	88.52
KRG91923	Soybean	endoplasmic reticulum, extracellular, plasma membrane	64.71	64.59
KRH34856	Soybean	extracellular	64.52	64.4
VIT_13s0019g04450.t01	Wine grape	endoplasmic reticulum, extracellular	63.79	63.79
PGSC0003DMT400055528	Potato	mitochondrion	58.64	58.53
GSMUA_Achr4P18210_001	Banana	extracellular, plasma membrane	15.26	58.45
Solyc09g007860.2.1	Tomato	endoplasmic reticulum	57.72	57.61
KRH15981	Soybean	extracellular	15.62	56.29
EER88839	Sorghum	endoplasmic reticulum, extracellular	54.23	55.04
Os06t0685300-00	Rice	endoplasmic reticulum, extracellular	54.41	54.81
GSMUA_Achr4P18220_001	Banana	cytosol, endoplasmic reticulum, golgi, mitochondrion	47.06	54.35
TraesCS7A01G447300.1	Wheat	extracellular, vacuole	53.49	53.99
TraesCS7D01G437000.1	Wheat	extracellular, vacuole	52.76	53.25
HORVU7Hr1G101310.22	Barley	extracellular, golgi	52.39	52.88
Bra031157.1-P	Field mustard	endoplasmic reticulum, extracellular	51.1	51.39
TraesCS7B01G347000.3	Wheat	extracellular, golgi	53.49	50.43
KRG95324	Soybean	extracellular, plasma membrane	11.21	50.41
Bra016478.1-P	Field mustard	endoplasmic reticulum, extracellular	45.77	48.92
Bra012209.1-P	Field mustard	cytosol	34.38	48.45
Zm00001d014499_P004	Maize	endoplasmic reticulum, extracellular	43.75	47.89
Bra015431.1-P	Field mustard	endoplasmic reticulum, extracellular	31.99	31.13
Bra023307.1-P	Field mustard	endoplasmic reticulum	31.62	30.61
Bra014457.1-P	Field mustard	endoplasmic reticulum, extracellular	26.47	28.51
Bra003434.1-P	Field mustard	endoplasmic reticulum, extracellular	26.1	28.12
Bra030612.1-P	Field mustard	endoplasmic reticulum, extracellular	31.62	26.96

Protein Annotations

Gene3D:2.60.40.150	MapMan:5.8.1.2	EnsemblPlantsGene:Bra009476	EnsemblPlants:Bra009476.1	EnsemblPlants:Bra009476.1-P	InterPro:C2_dom
InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0006810	GO:GO:0006869
GO:GO:0008150	GO:GO:0008289	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000008	InterPro:IPR031468
InterPro:IPR035892	UniProt:M4CZ29	PFAM:PF00168	PFAM:PF17047	PRINTS:PR00360	PFscan:PS50004
PFscan:PS51847	PANTHER:PTHR10774	PANTHER:PTHR10774:SF62	SMART:SM00239	InterPro:SMP_LBD	SUPFAM:SSF49562
InterPro:Synaptotagmin_SMP	TMHMM:TMhelix	UniParc:UPI0002547977	SEG:seg	:	:

Description

AT5G04220 (E=3e-282) SYTC, ATSYTC, NTMC2TYPE1.3, NTMC2T1.3 | SYTC

Coordinates

chrA10:+:16849025..16851754

Molecular Weight (calculated)

62129.9 Da

IEP (calculated)

9.023

GRAVY (calculated)

-0.175

Length

544 amino acids

Sequence
(BLAST)

001: MGFFGSVLGI LGFAIGIPIG LVVGFFVFVY SQPSHEEYPP ARPLVETSIT LLLDLLPDIP LWMKNPDYER VDWFNRFLSY MWPYLDKAIC EIIKSSAQPI
101: FADYIGTFCI ESIEFETLSL GSLPPTVHGN AGVKFYETNE KELLFEPSVK WAGNPNIVLV VKLMSLRIKV QLVDLQIFAI MRVALKPLLP TFPCFGAVVV
201: SLMEKPHVDF GLKVLGGDLM SIPGLYRYVQ ETIKRQVSSM YHWPQVLEIP ILDASTASVK KPVGLLHVNI IRARNLLKKD LLGTSDPYVK LSLTGEKLPA
301: KKTTIKKRNL NPEWNEHFKL IVKDPTSQVL QLEVFDWDKV GGHDRLGMQM IPLKKINPGE KKVFNLDLIK NSNIVMDVPE KKQRGRLELD LRYVPFRDES
401: LKYRNDVQDE KSSEDDDEFL SNAGLLSVAI QSAKDVEGKK KYTNPYALVL FRGEKKRTKM LRKTRDPRWN EEFQFTLEEP PLKESIRVEV MSKGTGFHFR
501: SKEELGHVDI NLDDVVANGR INQKYHLINS RNGVIHVEIR WTTG

Best Arabidopsis Sequence Match ( AT5G04220.2 )
(BLAST)

001: MGFFTSVLGI IGFVIGIPIG LILGFFVLIY SQPSHQEYPP ARPLVETSIS VLLDLLPDIP LWMKNPDYER VDWFNKFISY MWPYLDKAVC GIIRSSVQPL
101: FADYIGTFCI ESIEFENLSL GTLPPTVHGV KFYETNEKEL LFEPSIKWAG NPNIVLVLKV LSLRIRVQLV DLQFFAIVRV ALKPLLPTFP CFGMVVVSLM
201: EKPHVDFGLK VLGGDLMSIP GLYRYVQETI KRQVSSMYHW PQVLEIPILD SSTASVKKPV GLLHVSILRA RNLLKKDLLG TSDPYVKLSL TGEKLPAKKT
301: TIKKRNLNPE WNEHFKLIVK DPNSQVLQLE VFDWDKVGGH DRLGMQMIPL QKINPGERKE FNLDLIKNSN VVMDSGDKKK RGRLEVDLRY VPFREESIKR
401: RKESREEKSS EDDDFLSQAG LLSVAVQSAK DVEGKKKHSN PYAVVLFRGE KKKTKMLKKT RDPRWNEEFQ FTLEEPPVKE SIRVEVMSKG TGFHFRSKEE
501: LGHVDINLDD VVDNGRINQK YHLINSRNGI IHIEIRWTTS

Arabidopsis Description

SYT3Synaptotagmin-3 [Source:UniProtKB/Swiss-Prot;Acc:Q7XA06]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.