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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:
  • plastid 1
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 4
  • plasma membrane 5
  • golgi 4
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:plastid, secretory
BaCelLo:plastid
iPSORT:secretory
MultiLoc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:endoplasmic reticulum
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX70250 Canola endoplasmic reticulum, extracellular 98.16 97.62
Bra009476.1-P Field mustard endoplasmic reticulum, extracellular 97.61 97.61
AT5G04220.2 Thale cress endoplasmic reticulum, extracellular, plasma membrane 87.32 87.96
KRG91923 Soybean endoplasmic reticulum, extracellular, plasma membrane 63.79 63.67
KRH34856 Soybean extracellular 63.79 63.67
VIT_13s0019g04450.t01 Wine grape endoplasmic reticulum, extracellular 63.42 63.42
PGSC0003DMT400055528 Potato mitochondrion 58.27 58.17
Solyc09g007860.2.1 Tomato endoplasmic reticulum 57.54 57.43
GSMUA_Achr4P18210_001 Banana extracellular, plasma membrane 14.34 54.93
EER88839 Sorghum endoplasmic reticulum, extracellular 53.86 54.66
GSMUA_Achr4P18220_001 Banana cytosol, endoplasmic reticulum, golgi, mitochondrion 47.06 54.35
Os06t0685300-00 Rice endoplasmic reticulum, extracellular 53.86 54.26
KRH15981 Soybean extracellular 14.89 53.64
TraesCS7A01G447300.1 Wheat extracellular, vacuole 53.12 53.62
TraesCS7D01G437000.1 Wheat extracellular, vacuole 52.39 52.88
HORVU7Hr1G101310.22 Barley extracellular, golgi 52.02 52.5
CDX81995 Canola endoplasmic reticulum, extracellular 51.29 51.57
CDY13846 Canola endoplasmic reticulum, extracellular 50.92 51.2
TraesCS7B01G347000.3 Wheat extracellular, golgi 53.12 50.09
CDY54339 Canola endoplasmic reticulum, extracellular 50.37 49.91
CDY43415 Canola endoplasmic reticulum, extracellular 49.26 49.81
CDY62938 Canola endoplasmic reticulum, extracellular 50.18 49.73
CDY57593 Canola endoplasmic reticulum, extracellular 48.35 47.64
Zm00001d014499_P004 Maize endoplasmic reticulum, extracellular 43.38 47.48
KRG95324 Soybean extracellular, plasma membrane 10.48 47.11
CDY47278 Canola endoplasmic reticulum, extracellular 31.99 31.13
CDX85729 Canola endoplasmic reticulum, extracellular, plastid 31.07 30.51
CDY15543 Canola endoplasmic reticulum, extracellular 31.8 30.35
CDY10116 Canola endoplasmic reticulum, extracellular 31.99 30.26
CDY51108 Canola endoplasmic reticulum, extracellular, plastid 31.25 30.25
CDX86575 Canola endoplasmic reticulum, extracellular 31.8 29.98
CDY42483 Canola endoplasmic reticulum, extracellular 24.08 27.64
CDY45675 Canola endoplasmic reticulum, extracellular 25.55 27.52
CDX89094 Canola endoplasmic reticulum, extracellular, plasma membrane 23.9 27.43
CDX67848 Canola endoplasmic reticulum, extracellular, plasma membrane 23.71 27.22
Protein Annotations
Gene3D:2.60.40.150MapMan:5.8.1.2GO:A0A078HVK9UniProt:A0A078HVK9InterPro:C2_domInterPro:C2_domain_sf
EnsemblPlants:CDY41389ProteinID:CDY41389ProteinID:CDY41389.1GO:GO:0003674GO:GO:0005488GO:GO:0005575
GO:GO:0006810GO:GO:0006869GO:GO:0008150GO:GO:0008289GO:GO:0016020GO:GO:0016021
EnsemblPlantsGene:GSBRNA2T00072974001InterPro:IPR000008InterPro:IPR031468InterPro:IPR035892PFAM:PF00168PFAM:PF17047
PRINTS:PR00360PFscan:PS50004PFscan:PS51847PANTHER:PTHR10774PANTHER:PTHR10774:SF62SMART:SM00239
InterPro:SMP_LBDSUPFAM:SSF49562InterPro:Synaptotagmin_SMPTMHMM:TMhelixUniParc:UPI0004EE1E67SEG:seg
Description
BnaCnng10250DBnaCnng10250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HVK9]
Coordinates
chrLK032497:+:63710..66547
Molecular Weight (calculated)
62181.1 Da
IEP (calculated)
8.843
GRAVY (calculated)
-0.167
Length
544 amino acids
Sequence
(BLAST)
001: MGFFGSVLGI LGFAIGIPIG LIVGFFVFIY SQPSHEEYPP ARPLVETSIT LLLDLLPDMP LWMKNPDYER VDWFNRFLSY MWPYLDKAIC EIIKSSAQPI
101: FADYIGTFCI ESIEFETLSL GSLPPTGNVP TGVKFYETNE KELLFEPSVK WAGNPNIVLV IKLMSLRIKV QLVDLQIFAI MRVALKPLLP TFPCFGTVVV
201: SLMEKPHVDF GLKVLGGDLM SIPGLYRYVQ ETIKRQVSSM YHWPQVLEIP ILDASTASVK KPVGLLHVNI IRARNLLKKD LLGTSDPYVK LSLTGEKLPA
301: KKTTIKKRNL NPEWNEHFKL IVKDPTSQVL QLEVFDWDKV GGHDRLGMQM IPLKKINPGE KKVFNLDLIK NSNIVMDVPE KKQRGKLELD LRYVPFRDES
401: LKYRNDVQDE KSSEDDDEFL SNAGLLSVAI QSAKDVEGKK IYTNPYALVL FRGEKKRTKM LRKTRDPRWN EEFQFTLEEP PLKESIRVEV MSKGTGFHFR
501: SKEELGHVDI NLDDVVANGR INQKYHLINS RNGVIHIEIR WTTG
Best Arabidopsis Sequence Match ( AT5G04220.2 )
(BLAST)
001: MGFFTSVLGI IGFVIGIPIG LILGFFVLIY SQPSHQEYPP ARPLVETSIS VLLDLLPDIP LWMKNPDYER VDWFNKFISY MWPYLDKAVC GIIRSSVQPL
101: FADYIGTFCI ESIEFENLSL GTLPPTVHGV KFYETNEKEL LFEPSIKWAG NPNIVLVLKV LSLRIRVQLV DLQFFAIVRV ALKPLLPTFP CFGMVVVSLM
201: EKPHVDFGLK VLGGDLMSIP GLYRYVQETI KRQVSSMYHW PQVLEIPILD SSTASVKKPV GLLHVSILRA RNLLKKDLLG TSDPYVKLSL TGEKLPAKKT
301: TIKKRNLNPE WNEHFKLIVK DPNSQVLQLE VFDWDKVGGH DRLGMQMIPL QKINPGERKE FNLDLIKNSN VVMDSGDKKK RGRLEVDLRY VPFREESIKR
401: RKESREEKSS EDDDFLSQAG LLSVAVQSAK DVEGKKKHSN PYAVVLFRGE KKKTKMLKKT RDPRWNEEFQ FTLEEPPVKE SIRVEVMSKG TGFHFRSKEE
501: LGHVDINLDD VVDNGRINQK YHLINSRNGI IHIEIRWTTS
Arabidopsis Description
SYT3Synaptotagmin-3 [Source:UniProtKB/Swiss-Prot;Acc:Q7XA06]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.