Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009476.1-P | Field mustard | endoplasmic reticulum, extracellular | 88.52 | 87.87 |
| CDY41389 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 87.96 | 87.32 |
| CDX70250 | Canola | endoplasmic reticulum, extracellular | 87.96 | 86.84 |
| VIT_13s0019g04450.t01 | Wine grape | endoplasmic reticulum, extracellular | 65.74 | 65.26 |
| KRH34856 | Soybean | extracellular | 64.63 | 64.04 |
| KRG91923 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 64.26 | 63.67 |
| PGSC0003DMT400055528 | Potato | mitochondrion | 60.0 | 59.45 |
| Solyc09g007860.2.1 | Tomato | endoplasmic reticulum | 58.89 | 58.35 |
| GSMUA_Achr4P18210_001 | Banana | extracellular, plasma membrane | 14.81 | 56.34 |
| EER88839 | Sorghum | endoplasmic reticulum, extracellular | 55.0 | 55.41 |
| GSMUA_Achr4P18220_001 | Banana | cytosol, endoplasmic reticulum, golgi, mitochondrion | 48.15 | 55.2 |
| Os06t0685300-00 | Rice | endoplasmic reticulum, extracellular | 55.19 | 55.19 |
| TraesCS7A01G447300.1 | Wheat | extracellular, vacuole | 54.44 | 54.55 |
| TraesCS7D01G437000.1 | Wheat | extracellular, vacuole | 53.89 | 53.99 |
| HORVU7Hr1G101310.22 | Barley | extracellular, golgi | 53.7 | 53.8 |
| KRH15981 | Soybean | extracellular | 14.81 | 52.98 |
| TraesCS7B01G347000.3 | Wheat | extracellular, golgi | 54.63 | 51.13 |
| AT1G20080.3 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 50.74 | 51.02 |
| AT2G21010.1 | Thale cress | cytosol | 23.33 | 49.22 |
| Zm00001d014499_P004 | Maize | endoplasmic reticulum, extracellular | 44.63 | 48.49 |
| AT2G20990.3 | Thale cress | endoplasmic reticulum, extracellular | 51.11 | 47.67 |
| KRG95324 | Soybean | extracellular, plasma membrane | 10.56 | 47.11 |
| AT1G05500.1 | Thale cress | endoplasmic reticulum, extracellular | 31.48 | 30.36 |
| AT3G61050.2 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 27.41 | 29.02 |
| AT2G21040.1 | Thale cress | cytosol | 10.19 | 21.07 |
| AT3G61030.1 | Thale cress | mitochondrion | 19.63 | 20.83 |
| AT3G60950.1 | Thale cress | mitochondrion | 20.19 | 17.38 |
Protein Annotations
| Gene3D:2.60.40.150 | MapMan:5.8.1.2 | EntrezGene:830301 | UniProt:A0A178UMQ2 | EMBL:AB102952 | ProteinID:AED90712.1 |
| ProteinID:AED90713.1 | ArrayExpress:AT5G04220 | EnsemblPlantsGene:AT5G04220 | RefSeq:AT5G04220 | TAIR:AT5G04220 | RefSeq:AT5G04220-TAIR-G |
| EnsemblPlants:AT5G04220.2 | TAIR:AT5G04220.2 | Unigene:At.10090 | InterPro:C2_dom | InterPro:C2_domain_sf | ProteinID:CAC05504.1 |
| EMBL:FM213367 | EMBL:FM213368 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0006810 | GO:GO:0006869 | GO:GO:0008150 |
| GO:GO:0008289 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046872 | InterPro:IPR000008 | InterPro:IPR031468 |
| InterPro:IPR035892 | RefSeq:NP_568135.1 | RefSeq:NP_974729.1 | ProteinID:OAO95326.1 | PFAM:PF00168 | PFAM:PF17047 |
| PO:PO:0000013 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001185 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0020030 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PRINTS:PR00360 | PFscan:PS50004 | PFscan:PS51847 | PANTHER:PTHR10774 | PANTHER:PTHR10774:SF62 | UniProt:Q7XA06 |
| SMART:SM00239 | InterPro:SMP_LBD | SUPFAM:SSF49562 | Symbol:SYTC | InterPro:Synaptotagmin_SMP | TMHMM:TMhelix |
| UniParc:UPI000019B3FA | SEG:seg | : | : | : | : |
Description
SYT3Synaptotagmin-3 [Source:UniProtKB/Swiss-Prot;Acc:Q7XA06]
Coordinates
chr5:-:1155725..1158944
Molecular Weight (calculated)
61873.6 Da
IEP (calculated)
9.528
GRAVY (calculated)
-0.204
Length
540 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFFTSVLGI IGFVIGIPIG LILGFFVLIY SQPSHQEYPP ARPLVETSIS VLLDLLPDIP LWMKNPDYER VDWFNKFISY MWPYLDKAVC GIIRSSVQPL
101: FADYIGTFCI ESIEFENLSL GTLPPTVHGV KFYETNEKEL LFEPSIKWAG NPNIVLVLKV LSLRIRVQLV DLQFFAIVRV ALKPLLPTFP CFGMVVVSLM
201: EKPHVDFGLK VLGGDLMSIP GLYRYVQETI KRQVSSMYHW PQVLEIPILD SSTASVKKPV GLLHVSILRA RNLLKKDLLG TSDPYVKLSL TGEKLPAKKT
301: TIKKRNLNPE WNEHFKLIVK DPNSQVLQLE VFDWDKVGGH DRLGMQMIPL QKINPGERKE FNLDLIKNSN VVMDSGDKKK RGRLEVDLRY VPFREESIKR
401: RKESREEKSS EDDDFLSQAG LLSVAVQSAK DVEGKKKHSN PYAVVLFRGE KKKTKMLKKT RDPRWNEEFQ FTLEEPPVKE SIRVEVMSKG TGFHFRSKEE
501: LGHVDINLDD VVDNGRINQK YHLINSRNGI IHIEIRWTTS
101: FADYIGTFCI ESIEFENLSL GTLPPTVHGV KFYETNEKEL LFEPSIKWAG NPNIVLVLKV LSLRIRVQLV DLQFFAIVRV ALKPLLPTFP CFGMVVVSLM
201: EKPHVDFGLK VLGGDLMSIP GLYRYVQETI KRQVSSMYHW PQVLEIPILD SSTASVKKPV GLLHVSILRA RNLLKKDLLG TSDPYVKLSL TGEKLPAKKT
301: TIKKRNLNPE WNEHFKLIVK DPNSQVLQLE VFDWDKVGGH DRLGMQMIPL QKINPGERKE FNLDLIKNSN VVMDSGDKKK RGRLEVDLRY VPFREESIKR
401: RKESREEKSS EDDDFLSQAG LLSVAVQSAK DVEGKKKHSN PYAVVLFRGE KKKTKMLKKT RDPRWNEEFQ FTLEEPPVKE SIRVEVMSKG TGFHFRSKEE
501: LGHVDINLDD VVDNGRINQK YHLINSRNGI IHIEIRWTTS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.