Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G21010.1 | Thale cress | cytosol | 35.25 | 35.94 |
| HORVU5Hr1G084020.3 | Barley | cytosol | 24.52 | 29.36 |
| TraesCS5D01G336100.1 | Wheat | cytosol | 26.44 | 22.33 |
| Zm00001d030116_P001 | Maize | cytosol | 24.9 | 21.45 |
| TraesCS5B01G330500.1 | Wheat | cytosol | 23.75 | 21.09 |
| Bra031157.1-P | Field mustard | endoplasmic reticulum, extracellular | 32.18 | 15.53 |
| CDX81995 | Canola | endoplasmic reticulum, extracellular | 32.18 | 15.53 |
| CDY13846 | Canola | endoplasmic reticulum, extracellular | 32.18 | 15.53 |
| AT2G20990.3 | Thale cress | endoplasmic reticulum, extracellular | 33.72 | 15.2 |
| GSMUA_Achr4P25570_001 | Banana | endoplasmic reticulum, extracellular | 28.74 | 13.94 |
| VIT_03s0038g02330.t01 | Wine grape | endoplasmic reticulum | 28.35 | 13.73 |
| PGSC0003DMT400015793 | Potato | endoplasmic reticulum | 28.35 | 13.73 |
| Solyc01g111520.2.1 | Tomato | nucleus | 28.35 | 13.73 |
| AT1G20080.3 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 27.97 | 13.59 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 27.59 | 13.38 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 27.2 | 13.35 |
| KRH29282 | Soybean | endoplasmic reticulum | 26.82 | 12.99 |
| EER99265 | Sorghum | endoplasmic reticulum | 26.44 | 12.8 |
| HORVU5Hr1G084010.1 | Barley | endoplasmic reticulum, extracellular | 26.44 | 12.8 |
| KRH24304 | Soybean | endoplasmic reticulum | 26.44 | 12.8 |
| KRH51399 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 26.05 | 12.69 |
| TraesCS5A01G330400.1 | Wheat | golgi | 26.05 | 12.62 |
| TraesCS5D01G336200.1 | Wheat | endoplasmic reticulum | 26.05 | 12.62 |
| OQU92056 | Sorghum | endoplasmic reticulum | 26.05 | 12.62 |
| Zm00001d006238_P001 | Maize | plasma membrane | 26.05 | 12.62 |
| TraesCS5B01G330600.1 | Wheat | endoplasmic reticulum | 26.05 | 12.3 |
| GSMUA_Achr1P26490_001 | Banana | cytosol, mitochondrion | 24.14 | 11.86 |
| Zm00001d022625_P006 | Maize | cytosol, peroxisome, plastid | 26.82 | 10.95 |
| AT5G04220.2 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 21.07 | 10.19 |
| AT1G05500.1 | Thale cress | endoplasmic reticulum, extracellular | 14.94 | 6.96 |
| AT3G61050.2 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 4.21 | 2.16 |
| AT3G60950.1 | Thale cress | mitochondrion | 3.83 | 1.59 |
| AT3G61030.1 | Thale cress | mitochondrion | 3.07 | 1.57 |
| Os01t0819300-01 | Rice | cytosol, mitochondrion, plastid | 0.38 | 0.87 |
Protein Annotations
| Gene3D:2.60.40.150 | MapMan:35.1 | EntrezGene:816638 | ProteinID:AAD29812.2 | ProteinID:AAM15215.1 | ProteinID:AEC07114.1 |
| ArrayExpress:AT2G21040 | EnsemblPlantsGene:AT2G21040 | RefSeq:AT2G21040 | TAIR:AT2G21040 | RefSeq:AT2G21040-TAIR-G | EnsemblPlants:AT2G21040.1 |
| TAIR:AT2G21040.1 | InterPro:C2_dom | InterPro:C2_domain_sf | InterPro:IPR000008 | InterPro:IPR035892 | RefSeq:NP_565496.1 |
| PFAM:PF00168 | PFscan:PS50004 | PANTHER:PTHR10774 | PANTHER:PTHR10774:SF50 | UniProt:Q9SKQ7 | SMART:SM00239 |
| SUPFAM:SSF49562 | UniParc:UPI00000AB25E | SEG:seg | : | : | : |
Description
Calcium-dependent lipid-binding (CaLB domain) family protein [Source:UniProtKB/TrEMBL;Acc:Q9SKQ7]
Coordinates
chr2:+:9026157..9027310
Molecular Weight (calculated)
29234.2 Da
IEP (calculated)
10.252
GRAVY (calculated)
-0.323
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MQAVQKAPEG TPAAGGMFVV IVHSAEDVEG KHHTNPYVHI YFKGEERKTK HVKKNKDPKW NEEFSFMLEE PPIHEKMHVK VFSTSSRIVF VLRCASVEAA
101: YVPFEGIKPR GAKLFSDGSA CSKGFGDTTS FGDMALLGGM AIMLAHHDEG VLTCHVMVRE SFEEINMAWR AWKLVRQGAG SSGSWFVRRR FVRELVRQEA
201: VRQGAGLSGS RFVKEPVRQG AGSSGVGVWP LKSQGRPSDL RFFLKSTFSS FKFHDHYKII K
101: YVPFEGIKPR GAKLFSDGSA CSKGFGDTTS FGDMALLGGM AIMLAHHDEG VLTCHVMVRE SFEEINMAWR AWKLVRQGAG SSGSWFVRRR FVRELVRQEA
201: VRQGAGLSGS RFVKEPVRQG AGSSGVGVWP LKSQGRPSDL RFFLKSTFSS FKFHDHYKII K
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.