Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G330500.1 | Wheat | cytosol | 80.28 | 59.52 |
| TraesCS5D01G336100.1 | Wheat | cytosol | 78.9 | 55.66 |
| Zm00001d030116_P001 | Maize | cytosol | 73.85 | 53.14 |
| AT2G21010.1 | Thale cress | cytosol | 51.83 | 44.14 |
| HORVU5Hr1G084010.1 | Barley | endoplasmic reticulum, extracellular | 82.11 | 33.21 |
| Bra012209.1-P | Field mustard | cytosol | 56.88 | 32.12 |
| EER99265 | Sorghum | endoplasmic reticulum | 76.61 | 30.98 |
| Os09t0538800-01 | Rice | plasma membrane | 76.15 | 30.8 |
| Zm00001d006238_P001 | Maize | plasma membrane | 74.77 | 30.24 |
| OQU92056 | Sorghum | endoplasmic reticulum | 74.77 | 30.24 |
| VIT_03s0038g02330.t01 | Wine grape | endoplasmic reticulum | 64.68 | 26.16 |
| KRH29282 | Soybean | endoplasmic reticulum | 64.22 | 25.97 |
| KRH51399 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 63.76 | 25.93 |
| KRH24304 | Soybean | endoplasmic reticulum | 63.76 | 25.79 |
| Zm00001d022625_P006 | Maize | cytosol, peroxisome, plastid | 75.23 | 25.67 |
| VIT_18s0001g14630.t01 | Wine grape | endoplasmic reticulum, extracellular | 63.3 | 25.6 |
| Solyc01g111520.2.1 | Tomato | nucleus | 61.93 | 25.05 |
| PGSC0003DMT400015793 | Potato | endoplasmic reticulum | 61.93 | 25.05 |
| Bra016478.1-P | Field mustard | endoplasmic reticulum, extracellular | 58.26 | 24.95 |
| KRH05967 | Soybean | endoplasmic reticulum, extracellular | 61.01 | 24.72 |
| KRH17448 | Soybean | mitochondrion | 60.55 | 24.54 |
| AT2G21040.1 | Thale cress | cytosol | 29.36 | 24.52 |
| CDY43415 | Canola | endoplasmic reticulum, extracellular | 60.09 | 24.35 |
| Solyc12g089330.1.1 | Tomato | endoplasmic reticulum, extracellular | 56.88 | 23.62 |
| AT1G20080.3 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 57.8 | 23.46 |
| CDY57593 | Canola | endoplasmic reticulum, extracellular | 58.72 | 23.19 |
| CDY62938 | Canola | endoplasmic reticulum, extracellular | 58.26 | 23.13 |
| CDY54339 | Canola | endoplasmic reticulum, extracellular | 58.26 | 23.13 |
| PGSC0003DMT400075422 | Potato | endoplasmic reticulum, extracellular | 56.42 | 22.82 |
| Bra031157.1-P | Field mustard | endoplasmic reticulum, extracellular | 55.05 | 22.18 |
| CDY13846 | Canola | endoplasmic reticulum, extracellular | 55.05 | 22.18 |
| CDX81995 | Canola | endoplasmic reticulum, extracellular | 54.59 | 22.0 |
| AT2G20990.3 | Thale cress | endoplasmic reticulum, extracellular | 55.05 | 20.73 |
| HORVU7Hr1G101310.22 | Barley | extracellular, golgi | 42.2 | 17.07 |
| HORVU6Hr1G017900.14 | Barley | endoplasmic reticulum, extracellular, plasma membrane | 25.69 | 9.57 |
| HORVU2Hr1G114590.1 | Barley | endoplasmic reticulum, extracellular, plastid | 24.31 | 9.3 |
| HORVU2Hr1G052430.2 | Barley | cytosol | 12.39 | 7.65 |
| HORVU4Hr1G062820.2 | Barley | endoplasmic reticulum, extracellular, plasma membrane | 10.55 | 4.49 |
| Os01t0819200-00 | Rice | endoplasmic reticulum, extracellular | 1.83 | 1.31 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G084020.3 | EnsemblPlantsGene:HORVU5Hr1G084020 | Gene3D:2.60.40.150 | InterPro:C2_dom | InterPro:C2_domain_sf | InterPro:IPR000008 |
| InterPro:IPR035892 | PANTHER:PTHR10774 | PANTHER:PTHR10774:SF50 | PFAM:PF00168 | PFscan:PS50004 | SEG:seg |
| SMART:SM00239 | SUPFAM:SSF49562 | UniParc:UPI000B475D51 | UniProt:A0A287S217 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chrchr5H:+:570959332..570961489
Molecular Weight (calculated)
24984.1 Da
IEP (calculated)
6.802
GRAVY (calculated)
-0.705
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MLMSSTGHRV GKHEKMGMNR ILLKQLTPEE TKVVTLNLLK TMDPYDTQNE KSRGQITLEV TYKPFKEEID MEKESMDDTD EAQKAAEYAP TVSGLLCVIV
101: HEAQDLEGKH HTNPYAKIIF KGEEKKTKVI KKNRDPRWED EFEFHCEEPP TNDKLHVEVL SKAGKIGGIL HGKESLGYID IALAEVISNR RINEKYHLIG
201: SKNGQIQIEL QWRTSLKL
101: HEAQDLEGKH HTNPYAKIIF KGEEKKTKVI KKNRDPRWED EFEFHCEEPP TNDKLHVEVL SKAGKIGGIL HGKESLGYID IALAEVISNR RINEKYHLIG
201: SKNGQIQIEL QWRTSLKL
001: MGIISTILGV IGFGFGTTIG IVIGYYLFIY FQSTDVEDPE IKPLVELDSE TIATMFPEIP MWVKNPDFDR IDWLNKLIGH MWPYMDKAIC KMAKSIAKPI
101: IAEQIPNYKI DSVEFEMLTL GSLPPSFQGM KVYATDDKEI IMELSVKWAG NPNIIVVAKA FGLKATVQVI DLQVYATPRI TLKPLVPSFP CFANIFVSLM
201: DKPQVDFGLK LLGADVMAIP GLYRFVQEII KDQVANMYLW PKTLNVQIMD PSKAMKKPVG LLSVKVIKAI KLKKKDLLGG SDPYVKLTLS GDKVPGKKTV
301: VKHSNLNPEW NEEFDLVVKE PESQELQLIV YDWEQVGKHD KIGMNVIQLK DLTPEEPKLM TLELLKSMEP KEPVSEKSRG QLVVEVEYKP FKDDDIPENI
401: DDPNAVEKAP EGTPSTGGLL VVIVHEAEDL EGKYHTNPSV RLLFRGEERK TKRVKKNREP RWDEDFQFPL DEPPINDKLH VEVISSSSRL IHPKETLGYV
501: VINLGDVVSN RRINDKYHLI DSKNGRIQIE LQWRNSS
101: IAEQIPNYKI DSVEFEMLTL GSLPPSFQGM KVYATDDKEI IMELSVKWAG NPNIIVVAKA FGLKATVQVI DLQVYATPRI TLKPLVPSFP CFANIFVSLM
201: DKPQVDFGLK LLGADVMAIP GLYRFVQEII KDQVANMYLW PKTLNVQIMD PSKAMKKPVG LLSVKVIKAI KLKKKDLLGG SDPYVKLTLS GDKVPGKKTV
301: VKHSNLNPEW NEEFDLVVKE PESQELQLIV YDWEQVGKHD KIGMNVIQLK DLTPEEPKLM TLELLKSMEP KEPVSEKSRG QLVVEVEYKP FKDDDIPENI
401: DDPNAVEKAP EGTPSTGGLL VVIVHEAEDL EGKYHTNPSV RLLFRGEERK TKRVKKNREP RWDEDFQFPL DEPPINDKLH VEVISSSSRL IHPKETLGYV
501: VINLGDVVSN RRINDKYHLI DSKNGRIQIE LQWRNSS
Arabidopsis Description
SYT2Synaptotagmin-2 [Source:UniProtKB/Swiss-Prot;Acc:B6ETT4]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.