Factsheet for Zm00001d022625_P006

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99265	Sorghum	endoplasmic reticulum	81.06	96.1
Zm00001d006238_P001	Maize	plasma membrane	79.81	94.62
Zm00001d030116_P001	Maize	cytosol	42.88	90.43
Os09t0538800-01	Rice	plasma membrane	75.59	89.61
TraesCS5D01G336200.1	Wheat	endoplasmic reticulum	73.08	86.64
HORVU5Hr1G084010.1	Barley	endoplasmic reticulum, extracellular	72.14	85.53
TraesCS5A01G330400.1	Wheat	golgi	71.83	85.16
TraesCS5B01G330600.1	Wheat	endoplasmic reticulum	73.24	84.63
TraesCS5D01G336100.1	Wheat	cytosol	38.18	78.96
TraesCS5B01G330500.1	Wheat	cytosol	36.15	78.57
Os01t0819200-00	Rice	endoplasmic reticulum, extracellular	36.46	76.39
HORVU5Hr1G084020.3	Barley	cytosol	25.67	75.23
VIT_18s0001g14630.t01	Wine grape	endoplasmic reticulum, extracellular	62.28	73.84
PGSC0003DMT400015793	Potato	endoplasmic reticulum	60.41	71.61
Solyc01g111520.2.1	Tomato	nucleus	60.09	71.24
VIT_03s0038g02330.t01	Wine grape	endoplasmic reticulum	59.62	70.69
KRH29282	Soybean	endoplasmic reticulum	59.62	70.69
KRH05967	Soybean	endoplasmic reticulum, extracellular	59.0	70.07
KRH24304	Soybean	endoplasmic reticulum	59.0	69.94
KRH17448	Soybean	mitochondrion	58.84	69.89
KRH51399	Soybean	endoplasmic reticulum, extracellular, plasma membrane	58.06	69.22
PGSC0003DMT400075422	Potato	endoplasmic reticulum, extracellular	58.06	68.83
Solyc12g089330.1.1	Tomato	endoplasmic reticulum, extracellular	55.71	67.81
CDX81995	Canola	endoplasmic reticulum, extracellular	56.81	67.1
Bra031157.1-P	Field mustard	endoplasmic reticulum, extracellular	56.65	66.91
CDY13846	Canola	endoplasmic reticulum, extracellular	56.65	66.91
CDY43415	Canola	endoplasmic reticulum, extracellular	56.02	66.54
AT1G20080.3	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	55.56	66.11
Bra016478.1-P	Field mustard	endoplasmic reticulum, extracellular	52.11	65.42
CDY62938	Canola	endoplasmic reticulum, extracellular	56.18	65.39
CDY54339	Canola	endoplasmic reticulum, extracellular	56.18	65.39
CDY57593	Canola	endoplasmic reticulum, extracellular	56.02	64.86
Bra012209.1-P	Field mustard	cytosol	38.65	63.99
AT2G20990.3	Thale cress	endoplasmic reticulum, extracellular	56.81	62.69
AT2G21010.1	Thale cress	cytosol	23.94	59.77
Zm00001d014499_P004	Maize	endoplasmic reticulum, extracellular	35.21	45.27
Zm00001d002090_P001	Maize	endoplasmic reticulum, extracellular, plastid	24.26	26.91
AT2G21040.1	Thale cress	cytosol	10.95	26.82
Zm00001d007034_P008	Maize	endoplasmic reticulum, extracellular, plasma membrane	24.1	26.24
Zm00001d028437_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	20.34	25.05
Zm00001d019472_P005	Maize	endoplasmic reticulum, mitochondrion, plasma membrane	20.5	24.49

Protein Annotations

Gene3D:2.60.40.150	MapMan:5.8.1.2	UniProt:A0A1D6IPX9	InterPro:C2_dom	InterPro:C2_domain_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0006810	GO:GO:0006869	GO:GO:0008150	GO:GO:0008289
GO:GO:0016020	GO:GO:0016021	InterPro:IPR000008	InterPro:IPR031468	InterPro:IPR035892	ProteinID:ONM61284.1
PFAM:PF00168	PFAM:PF17047	PRINTS:PR00360	PFscan:PS50004	PFscan:PS51847	PANTHER:PTHR10774
PANTHER:PTHR10774:SF50	SMART:SM00239	InterPro:SMP_LBD	SUPFAM:SSF49562	InterPro:Synaptotagmin_SMP	TMHMM:TMhelix
UniParc:UPI0008447CC9	EnsemblPlantsGene:Zm00001d022625	EnsemblPlants:Zm00001d022625_P006	EnsemblPlants:Zm00001d022625_T006	SEG:seg	:

Description

Synaptotagmin-2

Coordinates

chr7:+:181493232..181506559

Molecular Weight (calculated)

72275.3 Da

IEP (calculated)

5.168

GRAVY (calculated)

-0.285

Length

639 amino acids

Sequence
(BLAST)

001: MQQRNISSEV AVSDLRRTLE SDEGTFSPRL LEMTDDRVLV SPVKAKQLKV YFRQRFKNVL NLEEAGAPNS VTVLPPSPTD VAAADTAPSE YPVSDVDVLE
101: GSKMGVISTV LGFFGFGFGL SAGIVIGYFF FIYVQPTDVK DVKVRPLVEY DSKSLEGILP EIPLWVKNPD YDRIDWLNRF LELMWPYLNK AICRTAQDIA
201: KPIIAENTAK YNIDTVEFET LTLGSLPPTF QEEQELIMEP SLKWAANPNI TVVVKAYGLK ATIQIVDLQV FASPRITLKP LVPTFPCFAK ILVSLMEKPH
301: VDFGLKLLGA DVMAIPGLYI FVQETIKEQV ASMYLWPKTL EVPIMDPSKA SKRPVGILLV KVVRAQNLRK KDLLGKSDPY VKLKMSDDKL PSKKTTVKRS
401: NLNPEWNEDF KFVVTDPENQ ALEVDVFDWE QAWLPVGKHE KMGMNMITLR ELPPEETKVT TLNLLKTMDP NDVQNEKSRG ELTLELIYKP FKEEDIEKED
501: TESADVIEKA PDGTPAGGGL LYVIVHEAQD LEGKHHTNPY AKIIFKGEEK KTKVIKKNRD PRWEDEFEFV CEEPPVNDKL HVDVLSKASK KGLIHGKETL
601: GYIDISLADV ISNKRINEKY HLIDSKNGQI QIELQWRTS

Best Arabidopsis Sequence Match ( AT2G20990.1 )
(BLAST)

001: MGFFSTILGF CGFGVGISLG LVIGYVLFVY LLPNDVKDPE IRSIADQDPK AMLRMLPEIP LWVKNPDFDR VDWINRFLEY MWPYLDKAIC KTAKNIAKPI
101: IEEQIPKYKI DSVEFETLTL GSLPPTFQGM KVYLTDEKEL IMEPCLKWAA NPNILVAIKA FGLKATVQVV DLQVFAQPRI TLKPLVPSFP CFANIYVSLM
201: EKPHVDFGLK LGGADLMSIP GLYRFVQEQI KDQVANMYLW PKTLVVPILD PAKAFRRPVG IVHVKVVRAV GLRKKDLMGG ADPFVKIKLS EDKIPSKKTT
301: VKHKNLNPEW NEEFKFSVRD PQTQVLEFSV YDWEQVGNPE KMGMNVLALK EMVPDEHKAF TLELRKTLDG GEDGQPPDKY RGKLEVELLY KPFTEEEMPK
401: GFEETQAVQK APEGTPAAGG MLVVIVHSAE DVEGKHHTNP YVRIYFKGEE RKTKHVKKNR DPRWNEEFTF MLEEPPVREK LHVEVLSTSS RIGLLHPKET
501: LGYVDIPVVD VVNNKRMNQK FHLIDSKNGK IQIELEWRTA S

Arabidopsis Description

SYTASynaptotagmin A [Source:UniProtKB/TrEMBL;Acc:F4IFM6]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.