Factsheet for Os09t0538800-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 3
extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

golgi: 25047511
plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99265	Sorghum	endoplasmic reticulum	92.21	92.21
Zm00001d006238_P001	Maize	plasma membrane	91.47	91.47
OQU92056	Sorghum	endoplasmic reticulum	89.98	89.98
Zm00001d030116_P001	Maize	cytosol	49.54	88.12
HORVU5Hr1G084010.1	Barley	endoplasmic reticulum, extracellular	87.38	87.38
TraesCS5D01G336200.1	Wheat	endoplasmic reticulum	87.38	87.38
TraesCS5A01G330400.1	Wheat	golgi	87.38	87.38
TraesCS5B01G330600.1	Wheat	endoplasmic reticulum	87.57	85.35
TraesCS5D01G336100.1	Wheat	cytosol	45.27	78.96
TraesCS5B01G330500.1	Wheat	cytosol	43.04	78.91
Os01t0819200-00	Rice	endoplasmic reticulum, extracellular	43.97	77.7
HORVU5Hr1G084020.3	Barley	cytosol	30.8	76.15
Zm00001d022625_P006	Maize	cytosol, peroxisome, plastid	89.61	75.59
Os02t0448400-01	Rice	plasma membrane	74.03	74.16
Os01t0819300-01	Rice	cytosol, mitochondrion, plastid	12.8	60.0
Os06t0685300-00	Rice	endoplasmic reticulum, extracellular	53.06	52.96
Os07t0409100-01	Rice	plasma membrane	25.23	26.41
Os03t0251600-00	Rice	plasma membrane	23.93	24.43
Os04t0644800-01	Rice	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.60.40.150	EntrezGene:4347715	MapMan:5.8.1.2	EMBL:AK065681	ProteinID:BAD34386.1	ProteinID:BAD46564.1
ProteinID:BAF25714.1	ProteinID:BAT09178.1	ProteinID:BAT09180.1	InterPro:C2_dom	InterPro:C2_domain_sf	ProteinID:EAZ45505.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0006810	GO:GO:0006869	GO:GO:0008150
GO:GO:0008289	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000008	InterPro:IPR031468	InterPro:IPR035892
EnsemblPlantsGene:Os09g0538800	EnsemblPlants:Os09t0538800-01	PFAM:PF00168	PFAM:PF17047	PRINTS:PR00360	PFscan:PS50004
PFscan:PS51847	PANTHER:PTHR10774	PANTHER:PTHR10774:SF50	UniProt:Q69JE2	SMART:SM00239	InterPro:SMP_LBD
SUPFAM:SSF49562	InterPro:Synaptotagmin_SMP	TMHMM:TMhelix	UniParc:UPI00003FF56E	RefSeq:XP_015612182.1	RefSeq:XP_015612183.1
SEG:seg	:	:	:	:	:

Description

Similar to Synaptotagmin C. (Os09t0538800-01);Similar to Synaptotagmin C. (Os09t0538800-02);Similar to calcium lipid binding protein-like. (Os09t0538800-03)

Coordinates

chr9:-:21213340..21222936

Molecular Weight (calculated)

61420.8 Da

IEP (calculated)

6.738

GRAVY (calculated)

-0.288

Length

539 amino acids

Sequence
(BLAST)

001: MGVISTVLGF SGFGFGFSAG IVIGYYFFIY FQPTDVKDVK VRPLVEYDSI SLDGILPEIP LWVKNPDYDR IDWLNRFLEM MWPYLNKAIC RTALDIAKPI
101: IEENRKTYKL ESIEFESLTL GSLPPTFQGM KVYVTEEQEL IMEPSLKWAA NPNVTVVVKA YGLKATVQIV DLQVFASPRI TLKPLVPTFP CFAKILVSLM
201: EKPHVDFGLK LFGADLMAIP GLYRFVQETI KKQVASMYLW PKTLEVPIMD PSKASKKPVG ILLVKVLRAQ NLRKKDLLGK SDPYVKLKMS DDKLPSKKTT
301: VKRSNLNPEW NEDFKFVVTD PETQALEINV FDWEQVGKHE KMGMNNILLK ELPADETKVM TVNLLKTMDP NDVQNEKSRG QLTLEVTYKP FKEEDMEKEG
401: IDNADVVEKA PDGTPAGGGL LYVVVHEAQD LEGKHHTNPY AKIIFKGEEK KTKVIKKNRD PRWEDEFEFV CEEPPVNDKL HIEVLSKASK KGLIHGKETL
501: GYIDISLADV ISNKRINEKY HLIDSKNGQI QIEMQWRTS

Best Arabidopsis Sequence Match ( AT2G20990.1 )
(BLAST)

001: MGFFSTILGF CGFGVGISLG LVIGYVLFVY LLPNDVKDPE IRSIADQDPK AMLRMLPEIP LWVKNPDFDR VDWINRFLEY MWPYLDKAIC KTAKNIAKPI
101: IEEQIPKYKI DSVEFETLTL GSLPPTFQGM KVYLTDEKEL IMEPCLKWAA NPNILVAIKA FGLKATVQVV DLQVFAQPRI TLKPLVPSFP CFANIYVSLM
201: EKPHVDFGLK LGGADLMSIP GLYRFVQEQI KDQVANMYLW PKTLVVPILD PAKAFRRPVG IVHVKVVRAV GLRKKDLMGG ADPFVKIKLS EDKIPSKKTT
301: VKHKNLNPEW NEEFKFSVRD PQTQVLEFSV YDWEQVGNPE KMGMNVLALK EMVPDEHKAF TLELRKTLDG GEDGQPPDKY RGKLEVELLY KPFTEEEMPK
401: GFEETQAVQK APEGTPAAGG MLVVIVHSAE DVEGKHHTNP YVRIYFKGEE RKTKHVKKNR DPRWNEEFTF MLEEPPVREK LHVEVLSTSS RIGLLHPKET
501: LGYVDIPVVD VVNNKRMNQK FHLIDSKNGK IQIELEWRTA S

Arabidopsis Description

SYTASynaptotagmin A [Source:UniProtKB/TrEMBL;Acc:F4IFM6]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.