Factsheet for TraesCS5A01G330400.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G084010.1	Barley	endoplasmic reticulum, extracellular	98.14	98.14
TraesCS5D01G336200.1	Wheat	endoplasmic reticulum	97.22	97.22
TraesCS5B01G330600.1	Wheat	endoplasmic reticulum	96.85	94.39
Os09t0538800-01	Rice	plasma membrane	87.38	87.38
EER99265	Sorghum	endoplasmic reticulum	87.2	87.2
Zm00001d006238_P001	Maize	plasma membrane	86.46	86.46
OQU92056	Sorghum	endoplasmic reticulum	85.9	85.9
Zm00001d030116_P001	Maize	cytosol	47.68	84.82
Os01t0819200-00	Rice	endoplasmic reticulum, extracellular	42.67	75.41
VIT_18s0001g14630.t01	Wine grape	endoplasmic reticulum, extracellular	73.47	73.47
KRH29282	Soybean	endoplasmic reticulum	72.36	72.36
PGSC0003DMT400015793	Potato	endoplasmic reticulum	72.36	72.36
Zm00001d022625_P006	Maize	cytosol, peroxisome, plastid	85.16	71.83
Solyc01g111520.2.1	Tomato	nucleus	71.8	71.8
KRH24304	Soybean	endoplasmic reticulum	71.61	71.61
VIT_03s0038g02330.t01	Wine grape	endoplasmic reticulum	70.87	70.87
KRH05967	Soybean	endoplasmic reticulum, extracellular	69.76	69.89
KRH17448	Soybean	mitochondrion	69.39	69.52
KRH51399	Soybean	endoplasmic reticulum, extracellular, plasma membrane	69.02	69.4
AT1G20080.3	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	66.79	67.04
PGSC0003DMT400075422	Potato	endoplasmic reticulum, extracellular	66.98	66.98
CDY43415	Canola	endoplasmic reticulum, extracellular	66.79	66.91
Bra016478.1-P	Field mustard	endoplasmic reticulum, extracellular	62.71	66.4
CDY13846	Canola	endoplasmic reticulum, extracellular	66.42	66.17
CDX81995	Canola	endoplasmic reticulum, extracellular	66.42	66.17
Bra031157.1-P	Field mustard	endoplasmic reticulum, extracellular	66.42	66.17
CDY62938	Canola	endoplasmic reticulum, extracellular	67.35	66.12
Solyc12g089330.1.1	Tomato	endoplasmic reticulum, extracellular	64.38	66.1
CDY54339	Canola	endoplasmic reticulum, extracellular	67.16	65.94
CDY57593	Canola	endoplasmic reticulum, extracellular	66.42	64.86
Bra012209.1-P	Field mustard	cytosol	45.83	63.99
AT2G20990.3	Thale cress	endoplasmic reticulum, extracellular	66.79	62.18
AT2G21010.1	Thale cress	cytosol	28.01	58.98
TraesCS7A01G447300.1	Wheat	extracellular, vacuole	52.69	52.69
TraesCS6A01G098900.2	Wheat	endoplasmic reticulum, extracellular	29.68	28.47
TraesCS2A01G517200.1	Wheat	endoplasmic reticulum, extracellular, plastid	28.57	27.02
AT2G21040.1	Thale cress	cytosol	12.62	26.05
TraesCS2A01G244800.1	Wheat	plasma membrane	24.12	25.59
TraesCS4A01G081200.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	24.12	25.24

Protein Annotations

Gene3D:2.60.40.150	MapMan:5.8.1.2	InterPro:C2_dom	InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0008289	InterPro:IPR000008	InterPro:IPR031468	InterPro:IPR035892	PFAM:PF00168	PFAM:PF17047
PRINTS:PR00360	PFscan:PS50004	PFscan:PS51847	PANTHER:PTHR10774	PANTHER:PTHR10774:SF50	SMART:SM00239
InterPro:SMP_LBD	SUPFAM:SSF49562	InterPro:Synaptotagmin_SMP	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS5A01G330400	EnsemblPlants:TraesCS5A01G330400.1
TIGR:cd00030	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5A:-:539956887..539960584

Molecular Weight (calculated)

61265.4 Da

IEP (calculated)

6.538

GRAVY (calculated)

-0.302

Length

539 amino acids

Sequence
(BLAST)

001: MGVVSTVLGL FGFGFGFSSG IAIGYYFFIY FQPTNVKDVE VRPLVEYDSN SLDGILPEIP MWVKNPDYDR IDWLNRFLEL MWPNLNKAIC RMAQDIAKPI
101: IAENCEKYKI DSVEFETLTL GTLPPTFQGM KVYVTDEKEL IMEPSLKWAA NPNITVVAKA YGLKATVQIV DLQVFASPRI TLKPLVPTFP CFANISVSLM
201: EKPHVDFGLK LFGADLMAIP VLYKFVQDTI KKQVANMYLW PKTLEVPIMD ASKASKKPVG ILLLKVVRAQ NLKKKDLLGK SDPYAKLKMT DDKLPSKKTS
301: VKRSNLNPEW NEEFKFVVTD PENQSLEINV FDWEQVGKHE KMGMNRILLK ELPPEETKVL TLNLLKTMDP NDIQNEKSRG QIILEATYKP FKEEDMEKES
401: VDGVDEVQKA PDNTPAGGGL LFVVVHEAQD LEGKHHTNPY AKIIFKGEEK KTKVIKKNRD PRWEDEFEFV CEEPPTNDKL HVEVLSKAGK KGILHGKEAL
501: GYIDIALADV ISNKRINEKF HLIDSKNGQI QIELQWRTS

Best Arabidopsis Sequence Match ( AT1G20080.2 )
(BLAST)

001: MGIISTILGV IGFGFGTTIG IVIGYYLFIY FQSTDVEDPE IKPLVELDSE TIATMFPEIP MWVKNPDFDR IDWLNKLIGH MWPYMDKAIC KMAKSIAKPI
101: IAEQIPNYKI DSVEFEMLTL GSLPPSFQGM KVYATDDKEI IMELSVKWAG NPNIIVVAKA FGLKATVQVI DLQVYATPRI TLKPLVPSFP CFANIFVSLM
201: DKPQVDFGLK LLGADVMAIP GLYRFVQEII KDQVANMYLW PKTLNVQIMD PSKAMKKPVG LLSVKVIKAI KLKKKDLLGG SDPYVKLTLS GDKVPGKKTV
301: VKHSNLNPEW NEEFDLVVKE PESQELQLIV YDWEQVGKHD KIGMNVIQLK DLTPEEPKLM TLELLKSMEP KEPVSEKSRG QLVVEVEYKP FKDDDIPENI
401: DDPNAVEKAP EGTPSTGGLL VVIVHEAEDL EGKYHTNPSV RLLFRGEERK TKRVKKNREP RWDEDFQFPL DEPPINDKLH VEVISSSSRL IHPKETLGYV
501: VINLGDVVSN RRINDKYHLI DSKNGRIQIE LQWRNSS

Arabidopsis Description

SYT2Synaptotagmin-2 [Source:UniProtKB/Swiss-Prot;Acc:B6ETT4]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.