Factsheet for VIT_03s0038g02330.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 1
cytosol 3
extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g14630.t01	Wine grape	endoplasmic reticulum, extracellular	78.85	78.85
Solyc01g111520.2.1	Tomato	nucleus	78.66	78.66
PGSC0003DMT400015793	Potato	endoplasmic reticulum	78.48	78.48
KRH29282	Soybean	endoplasmic reticulum	78.48	78.48
KRH24304	Soybean	endoplasmic reticulum	78.11	78.11
KRH51399	Soybean	endoplasmic reticulum, extracellular, plasma membrane	75.7	76.12
GSMUA_Achr4P25570_001	Banana	endoplasmic reticulum, extracellular	75.7	75.84
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	74.95	75.09
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	72.17	73.12
CDX81995	Canola	endoplasmic reticulum, extracellular	73.28	73.01
CDY13846	Canola	endoplasmic reticulum, extracellular	72.91	72.64
Bra031157.1-P	Field mustard	endoplasmic reticulum, extracellular	72.91	72.64
EER99265	Sorghum	endoplasmic reticulum	72.17	72.17
OQU92056	Sorghum	endoplasmic reticulum	71.99	71.99
Zm00001d006238_P001	Maize	plasma membrane	71.43	71.43
TraesCS5D01G336200.1	Wheat	endoplasmic reticulum	71.24	71.24
HORVU5Hr1G084010.1	Barley	endoplasmic reticulum, extracellular	71.24	71.24
TraesCS5A01G330400.1	Wheat	golgi	70.87	70.87
TraesCS5B01G330600.1	Wheat	endoplasmic reticulum	71.61	69.8
Zm00001d030116_P001	Maize	cytosol	38.78	68.98
AT2G20990.3	Thale cress	endoplasmic reticulum, extracellular	73.1	68.05
AT2G21010.1	Thale cress	cytosol	31.54	66.41
HORVU5Hr1G084020.3	Barley	cytosol	26.16	64.68
TraesCS5B01G330500.1	Wheat	cytosol	34.88	63.95
GSMUA_Achr1P26490_001	Banana	cytosol, mitochondrion	62.52	63.47
TraesCS5D01G336100.1	Wheat	cytosol	35.99	62.78
Zm00001d022625_P006	Maize	cytosol, peroxisome, plastid	70.69	59.62
VIT_13s0019g04450.t01	Wine grape	endoplasmic reticulum, extracellular	60.11	59.56
VIT_18s0001g14590.t01	Wine grape	cytosol	9.83	57.61
VIT_09s0018g01580.t01	Wine grape	cytosol	9.65	56.52
VIT_10s0003g03240.t01	Wine grape	mitochondrion	12.43	55.37
VIT_12s0055g01250.t01	Wine grape	cytosol, mitochondrion	12.43	55.37
VIT_08s0040g01740.t01	Wine grape	endoplasmic reticulum, extracellular	55.29	54.48
Os01t0819300-01	Rice	cytosol, mitochondrion, plastid	9.46	44.35
AT2G21040.1	Thale cress	cytosol	13.73	28.35
VIT_04s0008g05740.t01	Wine grape	endoplasmic reticulum	29.31	27.72
VIT_11s0118g00230.t01	Wine grape	endoplasmic reticulum, extracellular	28.76	27.34
VIT_15s0048g01410.t01	Wine grape	endoplasmic reticulum, extracellular	24.12	25.34

Protein Annotations

EntrezGene:100241744	wikigene:100241744	Gene3D:2.60.40.150	MapMan:5.8.1.2	InterPro:C2_dom	InterPro:C2_domain_sf
ProteinID:CBI37880	ProteinID:CBI37880.3	UniProt:D7U561	EMBL:FN596508	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0006810	GO:GO:0006869	GO:GO:0008150	GO:GO:0008289	GO:GO:0016020
GO:GO:0016021	InterPro:IPR000008	InterPro:IPR031468	InterPro:IPR035892	EntrezGene:LOC100241744	wikigene:LOC100241744
PFAM:PF00168	PFAM:PF17047	PRINTS:PR00360	PFscan:PS50004	PFscan:PS51847	PANTHER:PTHR10774
PANTHER:PTHR10774:SF50	SMART:SM00239	InterPro:SMP_LBD	SUPFAM:SSF49562	InterPro:Synaptotagmin_SMP	TMHMM:TMhelix
UniParc:UPI00015C9189	ArrayExpress:VIT_03s0038g02330	EnsemblPlantsGene:VIT_03s0038g02330	EnsemblPlants:VIT_03s0038g02330.t01	RefSeq:XP_002278341	RefSeq:XP_002278341.1
RefSeq:XP_003631571	RefSeq:XP_003631571.1	:	:	:	:

Description

No Description!

Coordinates

chr3:-:1595396..1600087

Molecular Weight (calculated)

61290.0 Da

IEP (calculated)

6.620

GRAVY (calculated)

-0.201

Length

539 amino acids

Sequence
(BLAST)

001: MGFVSSILGL FGFGVGISIG LLVGYFFFIY FESSDVKDPD IRPLAEQDSE SLQRLLPELP LWVKNPDFDR VDWLNKFIEY MWPYLDKAIC KTVKDTAAPI
101: IAEQILKYKI DAVEFKTLTL GSLPPTFQGI KVYSTDEKEL IMEPCLKWAA NPNVTVAVKA FGLKATAQVV DLQVFALPRI TMKPLVPSFP CFANIFVSLM
201: EKPHVDFGLK LLGADLMSIP GLYRFVQELI KEQVANMYLW PRTLDVQILD IANAMKRPVG ILTVKVLRAM KLKKKDLLGA SDPYVKLRLT EDKLPSKKTT
301: VKHKNLNPEW NEEFNLVVRV PGVQALELCV YDWEQVGKHD KMGMNVVPLK ELPPDEPKMM TLDLLKSLDP NDSQNDKGRG QLEVELTYKP FKEEDMVKES
401: DDLGTLEKAP EGTPPGGGLL VVIVHEAQDL EGKHHTNPLV RILFRGEERK TKPIKKSRDP RWQEEFQFML EEPPINDKLH VEVISTSKRI GLLHPKESLG
501: YIVVNLADVV TNKRINEKYH LIDSKNGQIQ IELQWRTSS

Best Arabidopsis Sequence Match ( AT1G20080.2 )
(BLAST)

001: MGIISTILGV IGFGFGTTIG IVIGYYLFIY FQSTDVEDPE IKPLVELDSE TIATMFPEIP MWVKNPDFDR IDWLNKLIGH MWPYMDKAIC KMAKSIAKPI
101: IAEQIPNYKI DSVEFEMLTL GSLPPSFQGM KVYATDDKEI IMELSVKWAG NPNIIVVAKA FGLKATVQVI DLQVYATPRI TLKPLVPSFP CFANIFVSLM
201: DKPQVDFGLK LLGADVMAIP GLYRFVQEII KDQVANMYLW PKTLNVQIMD PSKAMKKPVG LLSVKVIKAI KLKKKDLLGG SDPYVKLTLS GDKVPGKKTV
301: VKHSNLNPEW NEEFDLVVKE PESQELQLIV YDWEQVGKHD KIGMNVIQLK DLTPEEPKLM TLELLKSMEP KEPVSEKSRG QLVVEVEYKP FKDDDIPENI
401: DDPNAVEKAP EGTPSTGGLL VVIVHEAEDL EGKYHTNPSV RLLFRGEERK TKRVKKNREP RWDEDFQFPL DEPPINDKLH VEVISSSSRL IHPKETLGYV
501: VINLGDVVSN RRINDKYHLI DSKNGRIQIE LQWRNSS

Arabidopsis Description

SYT2Synaptotagmin-2 [Source:UniProtKB/Swiss-Prot;Acc:B6ETT4]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.