Factsheet for GSMUA_Achr1P26490_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 2
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	75.89	75.75
GSMUA_Achr4P25570_001	Banana	endoplasmic reticulum, extracellular	68.36	67.47
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	66.48	65.61
Solyc01g111520.2.1	Tomato	nucleus	65.54	64.56
VIT_18s0001g14630.t01	Wine grape	endoplasmic reticulum, extracellular	65.16	64.19
PGSC0003DMT400015793	Potato	endoplasmic reticulum	65.16	64.19
VIT_03s0038g02330.t01	Wine grape	endoplasmic reticulum	63.47	62.52
KRH05967	Soybean	endoplasmic reticulum, extracellular	63.28	62.45
KRH17448	Soybean	mitochondrion	63.09	62.27
KRH29282	Soybean	endoplasmic reticulum	62.71	61.78
Solyc12g089330.1.1	Tomato	endoplasmic reticulum, extracellular	61.02	61.71
KRH24304	Soybean	endoplasmic reticulum	62.52	61.6
PGSC0003DMT400075422	Potato	endoplasmic reticulum, extracellular	61.77	60.85
AT1G20080.3	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	60.83	60.15
Bra012209.1-P	Field mustard	cytosol	43.5	59.84
KRH51399	Soybean	endoplasmic reticulum, extracellular, plasma membrane	60.26	59.7
CDY62938	Canola	endoplasmic reticulum, extracellular	61.39	59.38
CDY54339	Canola	endoplasmic reticulum, extracellular	61.39	59.38
Bra016478.1-P	Field mustard	endoplasmic reticulum, extracellular	56.87	59.33
CDY43415	Canola	endoplasmic reticulum, extracellular	59.89	59.11
CDX81995	Canola	endoplasmic reticulum, extracellular	59.7	58.6
CDY13846	Canola	endoplasmic reticulum, extracellular	59.51	58.41
Bra031157.1-P	Field mustard	endoplasmic reticulum, extracellular	59.51	58.41
CDY57593	Canola	endoplasmic reticulum, extracellular	59.89	57.61
AT2G21010.1	Thale cress	cytosol	26.74	55.47
AT2G20990.3	Thale cress	endoplasmic reticulum, extracellular	59.32	54.4
GSMUA_Achr4P18220_001	Banana	cytosol, endoplasmic reticulum, golgi, mitochondrion	45.57	51.38
GSMUA_Achr4P18210_001	Banana	extracellular, plasma membrane	11.49	42.96
GSMUA_Achr7P05380_001	Banana	endoplasmic reticulum	28.44	25.9
GSMUA_Achr2P12230_001	Banana	endoplasmic reticulum, mitochondrion	24.11	25.65
GSMUA_Achr1P26040_001	Banana	endoplasmic reticulum, golgi	26.55	25.22
GSMUA_Achr5P04070_001	Banana	endoplasmic reticulum, mitochondrion	24.86	24.58
AT2G21040.1	Thale cress	cytosol	11.86	24.14
GSMUA_Achr3P19840_001	Banana	endoplasmic reticulum, golgi, plastid	26.93	23.95

Protein Annotations

Gene3D:2.60.40.150	MapMan:5.8.1.2	InterPro:C2_dom	InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0006810	GO:GO:0006869	GO:GO:0008150	GO:GO:0008289	GO:GO:0016020
GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr1G26490_001	EnsemblPlants:GSMUA_Achr1P26490_001	EnsemblPlants:GSMUA_Achr1T26490_001	InterPro:IPR000008	InterPro:IPR031468
InterPro:IPR035892	UniProt:M0S3A6	PFAM:PF00168	PFAM:PF17047	PRINTS:PR00360	PFscan:PS50004
PFscan:PS51847	PANTHER:PTHR10774	PANTHER:PTHR10774:SF152	SMART:SM00239	InterPro:SMP_LBD	SUPFAM:SSF49562
InterPro:Synaptotagmin_SMP	UniParc:UPI000296C1F5	SEG:seg	:	:	:

Description

Putative Extended synaptotagmin-3 [Source:GMGC_GENE;Acc:GSMUA_Achr1G26490_001]

Coordinates

chr1:+:22087484..22093230

Molecular Weight (calculated)

61109.1 Da

IEP (calculated)

6.889

GRAVY (calculated)

-0.319

Length

531 amino acids

Sequence
(BLAST)

001: MLILHLLFFQ RYQRSYAEML SFDPKIRPLV EDDTQSLERM LPEIPLWVKY SDYDRIDWLN KIVELMWPYL DKAICRTAKQ VAEPVIAENA LKYKINSVQF
101: ETLTLGSLPP AFHGMKVYIT EENELTLEPS LKWAGNPNVI TVIKAYGLRL TIQMVDLQIF AAPRITLKPL VPSFPCFAKI CMSLTEKPHV DFGLKLLGAD
201: LMAIPGLYRF VQETIKNQVA NMFLWPRILE VPVLDVSRAS KKPVGILHVK IIKAYKLRKL DFFGKSDPYV KLKLSDEKLP SKKTSVKHSN LDPEWNEEFK
301: FVIKDPENQV VELNVYDWEK ACNFHNTFVG KHERMGMNVI QLNELTPDGP KTLTLNLLKN LESRDVQSDE SHGQIVVEVK YKPFKEEDLS KDISENADAV
401: EDSPDYGPSG GGLLVIIVHE AHDLEGKHHT NPYARILFRG EKRKTKHIKS NRDPRWEEEF QFVCEEPPVN DKMQVEVLSK APIIGIYSKE ILGYVTISLA
501: DVVNSKRTNN TYHLIDSNNG QIQIEMQWKT S

Best Arabidopsis Sequence Match ( AT1G20080.2 )
(BLAST)

001: MGIISTILGV IGFGFGTTIG IVIGYYLFIY FQSTDVEDPE IKPLVELDSE TIATMFPEIP MWVKNPDFDR IDWLNKLIGH MWPYMDKAIC KMAKSIAKPI
101: IAEQIPNYKI DSVEFEMLTL GSLPPSFQGM KVYATDDKEI IMELSVKWAG NPNIIVVAKA FGLKATVQVI DLQVYATPRI TLKPLVPSFP CFANIFVSLM
201: DKPQVDFGLK LLGADVMAIP GLYRFVQEII KDQVANMYLW PKTLNVQIMD PSKAMKKPVG LLSVKVIKAI KLKKKDLLGG SDPYVKLTLS GDKVPGKKTV
301: VKHSNLNPEW NEEFDLVVKE PESQELQLIV YDWEQVGKHD KIGMNVIQLK DLTPEEPKLM TLELLKSMEP KEPVSEKSRG QLVVEVEYKP FKDDDIPENI
401: DDPNAVEKAP EGTPSTGGLL VVIVHEAEDL EGKYHTNPSV RLLFRGEERK TKRVKKNREP RWDEDFQFPL DEPPINDKLH VEVISSSSRL IHPKETLGYV
501: VINLGDVVSN RRINDKYHLI DSKNGRIQIE LQWRNSS

Arabidopsis Description

SYT2Synaptotagmin-2 [Source:UniProtKB/Swiss-Prot;Acc:B6ETT4]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.