Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P12230_001 | Banana | endoplasmic reticulum, mitochondrion | 79.14 | 85.17 |
| VIT_15s0048g01410.t01 | Wine grape | endoplasmic reticulum, extracellular | 70.58 | 73.88 |
| EER96263 | Sorghum | mitochondrion, plasma membrane | 67.97 | 71.85 |
| TraesCS2A01G244800.1 | Wheat | plasma membrane | 67.41 | 71.26 |
| TraesCS2B01G262400.1 | Wheat | plasma membrane | 67.41 | 71.26 |
| TraesCS2D01G242600.1 | Wheat | plasma membrane | 67.23 | 71.06 |
| Os07t0409100-01 | Rice | plasma membrane | 67.97 | 70.87 |
| KRH48321 | Soybean | endoplasmic reticulum, mitochondrion | 69.09 | 70.8 |
| Solyc10g017590.2.1 | Tomato | mitochondrion | 61.64 | 69.68 |
| EER93061 | Sorghum | endoplasmic reticulum, mitochondrion | 65.18 | 69.44 |
| CDY42483 | Canola | endoplasmic reticulum, extracellular | 61.27 | 69.41 |
| KRH65210 | Soybean | endoplasmic reticulum, mitochondrion | 69.09 | 69.35 |
| CDX89094 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 61.08 | 69.2 |
| Bra014457.1-P | Field mustard | endoplasmic reticulum, extracellular | 64.99 | 69.11 |
| Solyc01g094030.2.1 | Tomato | plastid | 64.99 | 69.11 |
| KRH40562 | Soybean | endoplasmic reticulum | 68.34 | 68.6 |
| CDX67848 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 60.52 | 68.57 |
| CDY45675 | Canola | endoplasmic reticulum, extracellular | 64.43 | 68.51 |
| PGSC0003DMT400026606 | Potato | cytosol, endoplasmic reticulum, mitochondrion, plastid | 61.45 | 68.46 |
| Bra003434.1-P | Field mustard | endoplasmic reticulum, extracellular | 64.25 | 68.32 |
| AT3G61050.2 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 64.62 | 68.04 |
| PGSC0003DMT400035570 | Potato | cytosol | 47.11 | 67.65 |
| KRH00619 | Soybean | mitochondrion, plasma membrane | 68.34 | 67.34 |
| Zm00001d019472_P005 | Maize | endoplasmic reticulum, mitochondrion, plasma membrane | 65.74 | 65.98 |
| Solyc05g047710.2.1 | Tomato | endoplasmic reticulum, mitochondrion | 60.34 | 65.45 |
| EER92549 | Sorghum | endoplasmic reticulum, extracellular | 61.83 | 64.97 |
| Zm00001d028437_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 62.76 | 64.93 |
| TraesCS4B01G222600.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 60.71 | 64.05 |
| HORVU4Hr1G062820.2 | Barley | endoplasmic reticulum, extracellular, plasma membrane | 60.71 | 63.67 |
| TraesCS4D01G223100.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 60.34 | 62.91 |
| TraesCS4A01G081200.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 60.15 | 62.72 |
| Solyc10g052520.1.1 | Tomato | endoplasmic reticulum, extracellular | 29.61 | 61.87 |
| HORVU2Hr1G052430.2 | Barley | cytosol | 40.04 | 60.91 |
| Os03t0251600-00 | Rice | plasma membrane | 59.4 | 60.42 |
| KRH55269 | Soybean | cytosol, plasma membrane | 28.86 | 59.16 |
| AT3G61030.1 | Thale cress | mitochondrion | 39.85 | 42.04 |
| AT3G60950.1 | Thale cress | mitochondrion | 40.04 | 34.29 |
| GSMUA_Achr4P18210_001 | Banana | extracellular, plasma membrane | 8.01 | 30.28 |
| GSMUA_Achr7P05380_001 | Banana | endoplasmic reticulum | 32.03 | 29.5 |
| GSMUA_Achr1P26040_001 | Banana | endoplasmic reticulum, golgi | 30.35 | 29.16 |
| GSMUA_Achr3P19840_001 | Banana | endoplasmic reticulum, golgi, plastid | 30.91 | 27.81 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 25.88 | 25.84 |
| GSMUA_Achr4P25570_001 | Banana | endoplasmic reticulum, extracellular | 25.51 | 25.46 |
| GSMUA_Achr1P26490_001 | Banana | cytosol, mitochondrion | 24.58 | 24.86 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 24.21 | 24.44 |
| GSMUA_Achr4P18220_001 | Banana | cytosol, endoplasmic reticulum, golgi, mitochondrion | 20.3 | 23.14 |
Protein Annotations
| Gene3D:2.60.40.150 | MapMan:35.1 | InterPro:C2_dom | InterPro:C2_domain_sf | InterPro:CLB_plant | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006810 |
| GO:GO:0006869 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSMUA_Achr5G04070_001 | EnsemblPlants:GSMUA_Achr5P04070_001 | EnsemblPlants:GSMUA_Achr5T04070_001 |
| InterPro:IPR000008 | InterPro:IPR031468 | InterPro:IPR035892 | UniProt:M0SVI6 | PFAM:PF00168 | PFAM:PF17047 |
| PFscan:PS50004 | PFscan:PS51847 | PANTHER:PTHR10774 | PANTHER:PTHR10774:SF51 | SMART:SM00239 | InterPro:SMP_LBD |
| SUPFAM:SSF49562 | InterPro:Synaptotagmin_SMP | TMHMM:TMhelix | UniParc:UPI000294C044 | SEG:seg | : |
Description
lipid binding protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G04070_001]
Coordinates
chr5:-:2894391..2911976
Molecular Weight (calculated)
58874.9 Da
IEP (calculated)
6.222
GRAVY (calculated)
0.027
Length
537 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLISGLVMG SLVGIALMAG WSRVMKSRSI KRAVDIKLLG FLGRDDLKKL CGDSYPEWVS FPLFEQVKWL NKLLGKLWPF IADAATLVIK DTVEPLLDDY
101: RPPGISSLKF SKLSLGNVPP KIEGIRVQSL KKGQLIMDID FRWGGDLSII LAVEALVASL PIQLKDLQVF TVIRVIFQLS EEIPCISAVV VALLAEPKPR
201: IDYTLKAVGG SLTAIPGLSD MIDDTVTSIV TDMLEWPHRI VVPLGGVDVD TSELELKPQG KLTVTIVKAN NLKNQEFVGK SDPYVVLFVR PVFKVKTKVV
301: DDNLSPVWNE TFELIAEDKE TQSVTFEVYD EDKLQQDKRM GIAKLSLNDL EPKTLKEIEL SLLTSLDTLK VKDKKDRGTL TIKVLYHPFT KEEQLVALEE
401: EKRTVEERRK LKEAGVIGST MDAFGGAASL VGSGVGIVGT GLESGVGMVG TGIGTGVGMV GSAGKFMGKS VTNQFSSSKR NFSGPFPAVQ GDGNATDKSK
501: ELCYLLYYIN HHNLVMLDYS CLDNLGKENT SKTQQYI
101: RPPGISSLKF SKLSLGNVPP KIEGIRVQSL KKGQLIMDID FRWGGDLSII LAVEALVASL PIQLKDLQVF TVIRVIFQLS EEIPCISAVV VALLAEPKPR
201: IDYTLKAVGG SLTAIPGLSD MIDDTVTSIV TDMLEWPHRI VVPLGGVDVD TSELELKPQG KLTVTIVKAN NLKNQEFVGK SDPYVVLFVR PVFKVKTKVV
301: DDNLSPVWNE TFELIAEDKE TQSVTFEVYD EDKLQQDKRM GIAKLSLNDL EPKTLKEIEL SLLTSLDTLK VKDKKDRGTL TIKVLYHPFT KEEQLVALEE
401: EKRTVEERRK LKEAGVIGST MDAFGGAASL VGSGVGIVGT GLESGVGMVG TGIGTGVGMV GSAGKFMGKS VTNQFSSSKR NFSGPFPAVQ GDGNATDKSK
501: ELCYLLYYIN HHNLVMLDYS CLDNLGKENT SKTQQYI
001: MGLISGILFG IIFGVALMAG WSRMMTHRSS KRVAKAVDMK LLGSLSRDDL KKICGDNFPQ WISFPAFEQV KWLNKLLSKM WPYIAEAATM VIRDSVEPLL
101: EDYRPPGITS LKFSKLTLGN VAPKIEGIRV QSFKEGQVTM DVDLRWGGDP NIVLGVTALV ASIPIQLKDL QVFTVARVIF QLADEIPCIS AVVVALLAEP
201: KPRIDYTLKA VGGSLTAIPG LSDMIDDTVD TIVKDMLQWP HRIVVPIGGI PVDLSDLELK PQGKLIVTVV KATNLKNKEL IGKSDPYATI YIRPVFKYKT
301: KAIENNLNPV WDQTFELIAE DKETQSLTVE VFDKDVGQDE RLGLVKLPLS SLEAGVTKEL ELNLLSSLDT LKVKDKKDRG SITLKVHYHE FNKEEQMAAL
401: EDEKKIMEER KRLKEAGVIG STMDAVGMVG SGLGAGVGMV GTGIGTGVGL VGSGVSSGVG MVGSGFGAVG SGLSKAGRFM GRTITGQSSK RSGSSTPVNT
501: VPENDGAKQQ
101: EDYRPPGITS LKFSKLTLGN VAPKIEGIRV QSFKEGQVTM DVDLRWGGDP NIVLGVTALV ASIPIQLKDL QVFTVARVIF QLADEIPCIS AVVVALLAEP
201: KPRIDYTLKA VGGSLTAIPG LSDMIDDTVD TIVKDMLQWP HRIVVPIGGI PVDLSDLELK PQGKLIVTVV KATNLKNKEL IGKSDPYATI YIRPVFKYKT
301: KAIENNLNPV WDQTFELIAE DKETQSLTVE VFDKDVGQDE RLGLVKLPLS SLEAGVTKEL ELNLLSSLDT LKVKDKKDRG SITLKVHYHE FNKEEQMAAL
401: EDEKKIMEER KRLKEAGVIG STMDAVGMVG SGLGAGVGMV GTGIGTGVGL VGSGVSSGVG MVGSGFGAVG SGLSKAGRFM GRTITGQSSK RSGSSTPVNT
501: VPENDGAKQQ
Arabidopsis Description
NTMC2TYPE4At3g61050 [Source:UniProtKB/TrEMBL;Acc:Q9LEX1]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.