Factsheet for PGSC0003DMT400035570

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g047710.2.1	Tomato	endoplasmic reticulum, mitochondrion	93.85	70.91
KRH55269	Soybean	cytosol, plasma membrane	48.13	68.7
HORVU2Hr1G052430.2	Barley	cytosol	58.56	62.04
VIT_15s0048g01410.t01	Wine grape	endoplasmic reticulum, extracellular	81.55	59.45
PGSC0003DMT400026606	Potato	cytosol, endoplasmic reticulum, mitochondrion, plastid	73.53	57.05
KRH48321	Soybean	endoplasmic reticulum, mitochondrion	79.41	56.68
AT3G61050.2	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	77.01	56.47
Bra014457.1-P	Field mustard	endoplasmic reticulum, extracellular	76.2	56.44
CDY45675	Canola	endoplasmic reticulum, extracellular	75.67	56.04
Bra003434.1-P	Field mustard	endoplasmic reticulum, extracellular	75.67	56.04
KRH65210	Soybean	endoplasmic reticulum, mitochondrion	79.41	55.51
CDX89094	Canola	endoplasmic reticulum, extracellular, plasma membrane	70.32	55.49
CDX67848	Canola	endoplasmic reticulum, extracellular, plasma membrane	70.05	55.27
CDY42483	Canola	endoplasmic reticulum, extracellular	69.79	55.06
KRH40562	Soybean	endoplasmic reticulum	78.34	54.77
KRH00619	Soybean	mitochondrion, plasma membrane	78.61	53.95
GSMUA_Achr2P12230_001	Banana	endoplasmic reticulum, mitochondrion	69.79	52.3
TraesCS2D01G242600.1	Wheat	plasma membrane	69.52	51.18
TraesCS2B01G262400.1	Wheat	plasma membrane	69.52	51.18
TraesCS2A01G244800.1	Wheat	plasma membrane	69.25	50.98
EER96263	Sorghum	mitochondrion, plasma membrane	67.38	49.61
Os07t0409100-01	Rice	plasma membrane	68.18	49.51
EER93061	Sorghum	endoplasmic reticulum, mitochondrion	63.9	47.42
GSMUA_Achr5P04070_001	Banana	endoplasmic reticulum, mitochondrion	67.65	47.11
Os03t0251600-00	Rice	plasma membrane	63.64	45.08
Zm00001d019472_P005	Maize	endoplasmic reticulum, mitochondrion, plasma membrane	64.44	45.05
Zm00001d028437_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	62.3	44.89
EER92549	Sorghum	endoplasmic reticulum, extracellular	60.96	44.62
TraesCS4B01G222600.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	59.09	43.42
TraesCS4D01G223100.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	59.36	43.11
TraesCS4A01G081200.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	59.09	42.91
HORVU4Hr1G062820.2	Barley	endoplasmic reticulum, extracellular, plasma membrane	57.75	42.19
PGSC0003DMT400041534	Potato	cytosol	13.64	35.17
PGSC0003DMT400054286	Potato	extracellular	6.42	34.29
PGSC0003DMT400068835	Potato	extracellular	6.42	34.29
AT3G61030.1	Thale cress	mitochondrion	43.32	31.83
PGSC0003DMT400020478	Potato	cytosol	35.29	30.99
AT3G60950.1	Thale cress	mitochondrion	44.12	26.32
PGSC0003DMT400078832	Potato	cytosol	17.65	24.91
PGSC0003DMT400036226	Potato	endoplasmic reticulum	33.42	22.64
PGSC0003DMT400015793	Potato	endoplasmic reticulum	27.01	18.74
PGSC0003DMT400055528	Potato	mitochondrion	27.01	18.53
PGSC0003DMT400075422	Potato	endoplasmic reticulum, extracellular	26.47	18.37
PGSC0003DMT400078829	Potato	extracellular, plasma membrane	12.03	17.44
PGSC0003DMT400046490	Potato	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.60.40.150	MapMan:35.1	InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:CLB_plant	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0006139	GO:GO:0006355	GO:GO:0006810
GO:GO:0006869	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000008	InterPro:IPR031468	InterPro:IPR035892
UniProt:M1B2H1	PFAM:PF00168	EnsemblPlantsGene:PGSC0003DMG400013676	PGSC:PGSC0003DMG400013676	EnsemblPlants:PGSC0003DMT400035570	PRINTS:PR00360
PFscan:PS50004	PFscan:PS51847	PANTHER:PTHR10774	PANTHER:PTHR10774:SF51	SMART:SM00239	InterPro:SMP_LBD
SUPFAM:SSF49562	UniParc:UPI0002951B2B	SEG:seg	:	:	:

Description

CLB1 [Source:PGSC_GENE;Acc:PGSC0003DMG400013676]

Coordinates

chr5:-:43392201..43396090

Molecular Weight (calculated)

40107.1 Da

IEP (calculated)

7.082

GRAVY (calculated)

-0.014

Length

374 amino acids

Sequence
(BLAST)

001: MDIDLRWGGD PNIVLGVQAA MVASIPIQLK DLQVYTIVRV IFQLAEEIPC ISAVVVALLS EPKPRIDYTL KAVGGSLTAL PGISDMIDDT VNSIVTDMLE
101: WPHRIVVPIG VGVDTSDLEL KPQGKLIVTV VRANSLKNHE MIGKSDPYAV VYIRPLFKLK TKTINNNLNP VWDQTFELIA EDKETQSLIL EVFDKDVGQD
201: QRMGVTKLPL NELVAETPKE IELRLLPKLD MLRVKDKKDR GTITVKVLYH EFNKEEQLAA LETEKKILEE RKRLKAEGVI GSTMDALDGA ASLVGSGVGM
301: VGTGLGAGVG LVGTGLGAGA GMVGSGLGAV GSGLSKAGKF MGKTLTGQSN HSRKKSGSHT RVNSVQENGG AKPL

Best Arabidopsis Sequence Match ( AT3G61050.1 )
(BLAST)

001: MGLISGILFG IIFGVALMAG WSRMMTHRSS KRVAKAVDMK LLGSLSRDDL KKICGDNFPQ WISFPAFEQV KWLNKLLSKM WPYIAEAATM VIRDSVEPLL
101: EDYRPPGITS LKFSKLTLGN VAPKIEGIRV QSFKEGQVTM DVDLRWGGDP NIVLGVTALV ASIPIQLKDL QVFTVARVIF QLADEIPCIS AVVVALLAEP
201: KPRIDYTLKA VGGSLTAIPG LSDMIDDTVD TIVKDMLQWP HRIVVPIGGI PVDLSDLELK PQGKLIVTVV KATNLKNKEL IGKSDPYATI YIRPVFKYKT
301: KAIENNLNPV WDQTFELIAE DKETQSLTVE VFDKDVGQDE RLGLVKLPLS SLEAGVTKEL ELNLLSSLDT LKVKDKKDRG SITLKVHYHE FNKEEQMAAL
401: EDEKKIMEER KRLKEAGVIG STMDAVGMVG SGLGAGVGMV GTGIGTGVGL VGSGVSSGVG MVGSGFGAVG SGLSKAGRFM GRTITGQSSK RSGSSTPVNT
501: VPENDGAKQQ

Arabidopsis Description

NTMC2TYPE4At3g61050 [Source:UniProtKB/TrEMBL;Acc:Q9LEX1]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.