Factsheet for PGSC0003DMT400055528

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 5
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g007860.2.1	Tomato	endoplasmic reticulum	96.15	96.15
VIT_18s0001g14590.t01	Wine grape	cytosol	11.56	68.48
VIT_09s0018g01580.t01	Wine grape	cytosol	11.19	66.3
VIT_10s0003g03240.t01	Wine grape	mitochondrion	14.5	65.29
VIT_12s0055g01250.t01	Wine grape	cytosol, mitochondrion	14.31	64.46
KRH34856	Soybean	extracellular	62.94	62.94
VIT_08s0040g01740.t01	Wine grape	endoplasmic reticulum, extracellular	62.2	61.97
KRG91923	Soybean	endoplasmic reticulum, extracellular, plasma membrane	61.83	61.83
GSMUA_Achr4P18210_001	Banana	extracellular, plasma membrane	15.78	60.56
AT5G04220.2	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	59.45	60.0
Bra009476.1-P	Field mustard	endoplasmic reticulum, extracellular	58.53	58.64
CDY41389	Canola	endoplasmic reticulum, extracellular, plasma membrane	58.17	58.27
CDX70250	Canola	endoplasmic reticulum, extracellular	58.17	57.95
KRH15981	Soybean	extracellular	15.6	56.29
GSMUA_Achr4P18220_001	Banana	cytosol, endoplasmic reticulum, golgi, mitochondrion	48.26	55.84
Os06t0685300-00	Rice	endoplasmic reticulum, extracellular	55.23	55.74
EER88839	Sorghum	endoplasmic reticulum, extracellular	54.68	55.6
TraesCS7A01G447300.1	Wheat	extracellular, vacuole	53.58	54.17
PGSC0003DMT400015793	Potato	endoplasmic reticulum	53.39	53.99
TraesCS7D01G437000.1	Wheat	extracellular, vacuole	53.39	53.99
KRG95324	Soybean	extracellular, plasma membrane	11.74	52.89
HORVU7Hr1G101310.22	Barley	extracellular, golgi	52.29	52.88
PGSC0003DMT400075422	Potato	endoplasmic reticulum, extracellular	51.56	52.13
TraesCS7B01G347000.3	Wheat	extracellular, golgi	54.13	51.13
Zm00001d014499_P004	Maize	endoplasmic reticulum, extracellular	44.59	48.89
PGSC0003DMT400041534	Potato	cytosol	8.81	33.1
PGSC0003DMT400036226	Potato	endoplasmic reticulum	32.29	31.88
PGSC0003DMT400068835	Potato	extracellular	4.04	31.43
PGSC0003DMT400054286	Potato	extracellular	4.04	31.43
PGSC0003DMT400020478	Potato	cytosol	23.3	29.81
PGSC0003DMT400078829	Potato	extracellular, plasma membrane	13.95	29.46
PGSC0003DMT400026606	Potato	cytosol, endoplasmic reticulum, mitochondrion, plastid	24.4	27.59
PGSC0003DMT400035570	Potato	cytosol	18.53	27.01
PGSC0003DMT400078832	Potato	cytosol	13.03	26.79
PGSC0003DMT400046490	Potato	cytosol	4.04	26.19

Protein Annotations

EntrezGene:102593497	Gene3D:2.60.40.150	MapMan:5.8.1.2	InterPro:C2_dom	InterPro:C2_domain_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0006810	GO:GO:0006869	GO:GO:0008150	GO:GO:0008289
GO:GO:0016020	GO:GO:0016021	InterPro:IPR000008	InterPro:IPR031468	InterPro:IPR035892	UniProt:M1BY39
PFAM:PF00168	PFAM:PF17047	EnsemblPlantsGene:PGSC0003DMG400021563	PGSC:PGSC0003DMG400021563	EnsemblPlants:PGSC0003DMT400055528	PFscan:PS50004
PFscan:PS51847	PANTHER:PTHR10774	PANTHER:PTHR10774:SF62	SMART:SM00239	InterPro:SMP_LBD	SUPFAM:SSF49562
InterPro:Synaptotagmin_SMP	TMHMM:TMhelix	UniParc:UPI00029692E8	RefSeq:XP_006354331.1	SEG:seg	:

Description

Calcium lipid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021563]

Coordinates

chr9:+:5584978..5591550

Molecular Weight (calculated)

61979.8 Da

IEP (calculated)

8.190

GRAVY (calculated)

-0.074

Length

545 amino acids

Sequence
(BLAST)

001: MGFFGSLLGI LGFGVGISIG LIVGYFLFIY FEARDVKDYP ESSPFDEIEP NSLVDLLPEL PLWVMNPDYE RVNWFNEFIA NMWPYLDKAI CGIIKSTSEP
101: IFAEYIGKYQ IKSIEFEQLT LGTIPPRLHG IKVYDSNEKE LVFEFAVRWA GNPNIVVALK LLSLKISAQL VDFQVAATAR ATLKPFVPTF PCFSNIVVSL
201: TKKPEVDFGL KVIGGDLMAI PGLHHFVQET ISKQVARLYL WPQTLDIPIL DSSIGAVKKP VGILHVKVLR AQKLLNMDFL SKSDPYVKLS LGGDMLPAKK
301: TTVKMNSLDP VWDEDFKLTV KDPEAQVLQL HLYDWEKIGA HDKLGMQVVP LKLLKPYEKK ELTLDLVHSL NPNDPQNKKP RGRLMLEMSF IPFQEDSIKF
401: SGPLSFHERK ESISSLSDDI SLRGAGLLLV TVIAAEDVEG KNHTNPYAVV VLRGEKKKTK ARNKTWNPKW EEEFQFMLED APLKELIHIE VKSKKRRFGF
501: RSKELLGYVD IQLKDVIFNG RINEKYHLIN SKDGILHVDI RWKVI

Best Arabidopsis Sequence Match ( AT5G04220.2 )
(BLAST)

001: MGFFTSVLGI IGFVIGIPIG LILGFFVLIY SQPSHQEYPP ARPLVETSIS VLLDLLPDIP LWMKNPDYER VDWFNKFISY MWPYLDKAVC GIIRSSVQPL
101: FADYIGTFCI ESIEFENLSL GTLPPTVHGV KFYETNEKEL LFEPSIKWAG NPNIVLVLKV LSLRIRVQLV DLQFFAIVRV ALKPLLPTFP CFGMVVVSLM
201: EKPHVDFGLK VLGGDLMSIP GLYRYVQETI KRQVSSMYHW PQVLEIPILD SSTASVKKPV GLLHVSILRA RNLLKKDLLG TSDPYVKLSL TGEKLPAKKT
301: TIKKRNLNPE WNEHFKLIVK DPNSQVLQLE VFDWDKVGGH DRLGMQMIPL QKINPGERKE FNLDLIKNSN VVMDSGDKKK RGRLEVDLRY VPFREESIKR
401: RKESREEKSS EDDDFLSQAG LLSVAVQSAK DVEGKKKHSN PYAVVLFRGE KKKTKMLKKT RDPRWNEEFQ FTLEEPPVKE SIRVEVMSKG TGFHFRSKEE
501: LGHVDINLDD VVDNGRINQK YHLINSRNGI IHIEIRWTTS

Arabidopsis Description

SYT3Synaptotagmin-3 [Source:UniProtKB/Swiss-Prot;Acc:Q7XA06]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.