Factsheet for PGSC0003DMT400036226

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 2
plastid 2
extracellular 3
endoplasmic reticulum 5
vacuole 3
plasma membrane 3
golgi 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g021940.1.1	Tomato	extracellular, plasma membrane	44.57	86.32
PGSC0003DMT400068835	Potato	extracellular	10.33	81.43
PGSC0003DMT400054286	Potato	extracellular	10.33	81.43
VIT_04s0008g05740.t01	Wine grape	endoplasmic reticulum	75.0	72.63
PGSC0003DMT400046490	Potato	cytosol	11.05	72.62
PGSC0003DMT400078829	Potato	extracellular, plasma membrane	33.15	70.93
PGSC0003DMT400020478	Potato	cytosol	54.71	70.89
CDX85729	Canola	endoplasmic reticulum, extracellular, plastid	70.47	70.22
CDY51108	Canola	endoplasmic reticulum, extracellular, plastid	70.65	69.39
Bra023307.1-P	Field mustard	endoplasmic reticulum	70.65	69.39
GSMUA_Achr1P26040_001	Banana	endoplasmic reticulum, golgi	69.93	69.05
PGSC0003DMT400078832	Potato	cytosol	32.79	68.3
GSMUA_Achr7P05380_001	Banana	endoplasmic reticulum	72.1	68.27
KRH52409	Soybean	endoplasmic reticulum, extracellular	70.65	67.94
PGSC0003DMT400041534	Potato	cytosol	17.57	66.9
TraesCS2A01G517200.1	Wheat	endoplasmic reticulum, extracellular, plastid	65.4	63.33
TraesCS2B01G545700.3	Wheat	endoplasmic reticulum, extracellular, plastid	65.4	63.33
TraesCS2D01G518800.1	Wheat	endoplasmic reticulum, extracellular, plastid	65.4	63.33
EES11541	Sorghum	extracellular, golgi	65.94	63.19
Zm00001d002090_P001	Maize	endoplasmic reticulum, extracellular, plastid	65.94	63.19
HORVU2Hr1G114590.1	Barley	endoplasmic reticulum, extracellular, plastid	64.86	62.81
GSMUA_Achr3P19840_001	Banana	endoplasmic reticulum, golgi, plastid	65.94	60.97
PGSC0003DMT400026606	Potato	cytosol, endoplasmic reticulum, mitochondrion, plastid	30.98	35.48
PGSC0003DMT400035570	Potato	cytosol	22.64	33.42
PGSC0003DMT400055528	Potato	mitochondrion	31.88	32.29
PGSC0003DMT400015793	Potato	endoplasmic reticulum	30.43	31.17
PGSC0003DMT400075422	Potato	endoplasmic reticulum, extracellular	29.71	30.43

Protein Annotations

Gene3D:2.60.40.150	MapMan:35.1	InterPro:C2_dom	InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0006810	GO:GO:0006869	GO:GO:0008150	GO:GO:0008289	GO:GO:0016020
GO:GO:0016021	InterPro:IPR000008	InterPro:IPR031468	InterPro:IPR035892	UniProt:M1B3E6	PFAM:PF00168
PFAM:PF17047	EnsemblPlantsGene:PGSC0003DMG400013947	PGSC:PGSC0003DMG400013947	EnsemblPlants:PGSC0003DMT400036226	PRINTS:PR00360	PFscan:PS50004
PFscan:PS51847	PANTHER:PTHR10774	PANTHER:PTHR10774:SF162	SMART:SM00239	InterPro:SMP_LBD	SUPFAM:SSF49562
InterPro:Synaptotagmin_SMP	UniParc:UPI0002949FAB	SEG:seg	:	:	:

Description

Calcium lipid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400013947]

Coordinates

chr8:-:21968262..21974010

Molecular Weight (calculated)

62009.7 Da

IEP (calculated)

6.369

GRAVY (calculated)

0.036

Length

552 amino acids

Sequence
(BLAST)

001: MGFFMGFFLG AALGVGLIVC FARFQNNRSK VRIDLAKSIT AFARMTVQDS RKLLPPEAYP SWLNWLNHHL EKIWPYVDEA ASELIRTSVE PVLEQYRPSI
101: LAALKFSKLT LGTVAPSFTG VSLLDGDPGE IIMELEMQWD GNPNIVLDIK TLVGVGLPIQ VKNIGFTGVF RLIFKPLVAE LPCFGAVCYS LRHKKNLDFT
201: LKVVGGDISA IPGVSDAIEG TIRDAIEDSI TWPVRNIVPI LPGDYSDLEL KPVGVLQVKL IEAKELTNKD LIGKSDPFVE LFIRPLRDRT KTSKVIDNCL
301: NPIWNEHFEF IVEDISTQHL TIRVYDDEGI QAAEFIGCAR IDLKLLEPGK VKDVWLKLVK DLEIQRDTKN RGHVHLELLF CPFGMDSVFM KGFKPDYALT
401: TLEKALRPEA ANFSQAISEK KGDILFRGVL SVTVISAEDV PVTDLMGKSD PFVVLIMKKS GKKNKTRVLN NTLNPVWNQT FDFVVEDGLH DLLILEVWDH
501: DTFGKDKIGR CIMTLTRVIL EGEFKDTFTL DGAKSGRLTF HLKWTPQPII RD

Best Arabidopsis Sequence Match ( AT1G05500.1 )
(BLAST)

001: MGFIVGVVIG LLVGIAIIIG FVKLENSRSK LRSELANTVA AFARMTVEDS RKLLPPEFYP SWVVFSERQK LTWLNHHLTK IWPYVDEAAS ELIKASVEPV
101: LEQYRPAIVA SLTFSKLTLG TVAPQFTGVS VIDGDKNGIT LELDMQWDGN PNIVLGVKTL VGVSLPIQVK NIGFTGVFRL IFRPLVEDFP CFGAVSVSLR
201: EKKKLDFTLK VVGGDISAIP GLSEAIEETI RDAVEDSITW PVRKVIPIIP GDYSDLELKP VGMLEVKLVQ AKNLTNKDLV GKSDPFAKMF IRPLREKTKR
301: SKTINNDLNP IWNEHFEFVV EDASTQHLVV RIYDDEGVQA SELIGCAQIR LCELEPGKVK DVWLKLVKDL EIQRDTKNRG EVHLELLYIP YGSGNGIVNP
401: FVTSSMTSLE RVLKNDTTDE ENASSRKRKD VIVRGVLSVT VISAEEIPIQ DLMGKADPYV VLSMKKSGAK SKTRVVNDSL NPVWNQTFDF VVEDGLHDML
501: VLEVWDHDTF GKDYIGRCIL TLTRVIMEEE YKDWYPLDES KTGKLQLHLK WMAQSIYRDS

Arabidopsis Description

SYT5Synaptotagmin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L706]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.