Factsheet for Bra023307.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 2
plastid 2
extracellular 3
endoplasmic reticulum 5
vacuole 3
plasma membrane 3
golgi 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85729	Canola	endoplasmic reticulum, extracellular, plastid	98.4	99.82
Bra015431.1-P	Field mustard	endoplasmic reticulum, extracellular	70.64	71.02
VIT_04s0008g05740.t01	Wine grape	endoplasmic reticulum	71.89	70.88
PGSC0003DMT400036226	Potato	endoplasmic reticulum	69.39	70.65
KRH52409	Soybean	endoplasmic reticulum, extracellular	71.53	70.03
GSMUA_Achr1P26040_001	Banana	endoplasmic reticulum, golgi	68.68	69.05
GSMUA_Achr7P05380_001	Banana	endoplasmic reticulum	69.75	67.24
Solyc08g021940.1.1	Tomato	extracellular, plasma membrane	33.81	66.67
Zm00001d002090_P001	Maize	endoplasmic reticulum, extracellular, plastid	65.84	64.24
EES11541	Sorghum	extracellular, golgi	65.84	64.24
TraesCS2B01G545700.3	Wheat	endoplasmic reticulum, extracellular, plastid	65.12	64.21
TraesCS2D01G518800.1	Wheat	endoplasmic reticulum, extracellular, plastid	64.95	64.04
TraesCS2A01G517200.1	Wheat	endoplasmic reticulum, extracellular, plastid	64.77	63.86
HORVU2Hr1G114590.1	Barley	endoplasmic reticulum, extracellular, plastid	64.59	63.68
Bra030612.1-P	Field mustard	endoplasmic reticulum, extracellular	70.11	61.76
GSMUA_Achr3P19840_001	Banana	endoplasmic reticulum, golgi, plastid	64.59	60.8
Bra014457.1-P	Field mustard	endoplasmic reticulum, extracellular	33.45	37.23
Bra003434.1-P	Field mustard	endoplasmic reticulum, extracellular	32.74	36.44
Bra009476.1-P	Field mustard	endoplasmic reticulum, extracellular	30.61	31.62
Bra031157.1-P	Field mustard	endoplasmic reticulum, extracellular	29.72	30.87
Bra012209.1-P	Field mustard	cytosol	21.17	30.83
Bra016478.1-P	Field mustard	endoplasmic reticulum, extracellular	26.51	29.27

Protein Annotations

Gene3D:2.60.40.150	MapMan:35.1	EnsemblPlantsGene:Bra023307	EnsemblPlants:Bra023307.1	EnsemblPlants:Bra023307.1-P	InterPro:C2_dom
InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0006810	GO:GO:0006869
GO:GO:0008150	GO:GO:0008289	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000008	InterPro:IPR031468
InterPro:IPR035892	UniProt:M4E3F5	PFAM:PF00168	PFAM:PF17047	PRINTS:PR00360	PFscan:PS50004
PFscan:PS51847	PANTHER:PTHR10774	PANTHER:PTHR10774:SF167	SMART:SM00239	InterPro:SMP_LBD	SUPFAM:SSF49562
InterPro:Synaptotagmin_SMP	TMHMM:TMhelix	UniParc:UPI0002543331	SEG:seg	:	:

Description

AT5G11100 (E=1e-300) SYTD, ATSYTD, NTMC2TYPE2.2, NTMC2T2.2 | SYTD

Coordinates

chrA02:+:2768874..2771987

Molecular Weight (calculated)

62638.0 Da

IEP (calculated)

5.237

GRAVY (calculated)

-0.020

Length

562 amino acids

Sequence
(BLAST)

001: MGFLFGLFIG IAVSIGLVVA FARYSNVRST RRAELARTIA AFARMTVQDS RKLLPGEFYP SWVLNWLNLE LEKIWPYVNE AASELIRSSV EPVLEQYTPA
101: MIASLKFSKL TLGTVAPQFT GVSILENESG PTGITMELEM QWDGNPKIVL DVKTLLGVAL PIEVKNVGFT GVFRLIFKPL VDEFPCFGAL SYSLREKKGL
201: DFTLKVIGGE LTSIPGISDA LEETILDAIE DSITWPVRKI IPILPGDYSD LELKPVGTLD VKLVQAKDLS NKDVIGKSDP YAVVFIRPLP NKTKKTKTIS
301: NSLNPIWNEH FEFVVEDVST QHLTVRVFDD EGVGSSQLIG AAQVPLNELE PGKVKDIWLK LVKDLVVQRD TKNRGQVQLE LLYCPLGKES GFKNPFNPNY
401: SLTILEKVLK PESEDSDATD VKSSQSPKKT DVIVRGVLSV TVVAAEDLPA VDFMGKADPF VVITLKKSEA KSKTRVVPDS LNPVWNQTFD FVVEDALHDL
501: LILEVWDHDK FGKDKIGRVI MTLTRVMLEG EFQEWYELDG AKSGKLCIHL KWTPRLKLRD SS

Best Arabidopsis Sequence Match ( AT1G05500.1 )
(BLAST)

001: MGFIVGVVIG LLVGIAIIIG FVKLENSRSK LRSELANTVA AFARMTVEDS RKLLPPEFYP SWVVFSERQK LTWLNHHLTK IWPYVDEAAS ELIKASVEPV
101: LEQYRPAIVA SLTFSKLTLG TVAPQFTGVS VIDGDKNGIT LELDMQWDGN PNIVLGVKTL VGVSLPIQVK NIGFTGVFRL IFRPLVEDFP CFGAVSVSLR
201: EKKKLDFTLK VVGGDISAIP GLSEAIEETI RDAVEDSITW PVRKVIPIIP GDYSDLELKP VGMLEVKLVQ AKNLTNKDLV GKSDPFAKMF IRPLREKTKR
301: SKTINNDLNP IWNEHFEFVV EDASTQHLVV RIYDDEGVQA SELIGCAQIR LCELEPGKVK DVWLKLVKDL EIQRDTKNRG EVHLELLYIP YGSGNGIVNP
401: FVTSSMTSLE RVLKNDTTDE ENASSRKRKD VIVRGVLSVT VISAEEIPIQ DLMGKADPYV VLSMKKSGAK SKTRVVNDSL NPVWNQTFDF VVEDGLHDML
501: VLEVWDHDTF GKDYIGRCIL TLTRVIMEEE YKDWYPLDES KTGKLQLHLK WMAQSIYRDS

Arabidopsis Description

SYT5Synaptotagmin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L706]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.