Factsheet for Bra030612.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

nucleus 1
extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15543	Canola	endoplasmic reticulum, extracellular	87.77	98.25
CDX86575	Canola	endoplasmic reticulum, extracellular	88.09	97.4
Bra015431.1-P	Field mustard	endoplasmic reticulum, extracellular	83.86	95.71
AT1G05500.1	Thale cress	endoplasmic reticulum, extracellular	81.5	92.86
PGSC0003DMT400068835	Potato	extracellular	8.93	81.43
PGSC0003DMT400054286	Potato	extracellular	8.93	81.43
PGSC0003DMT400046490	Potato	cytosol	10.03	76.19
PGSC0003DMT400020478	Potato	cytosol	50.47	75.59
PGSC0003DMT400078829	Potato	extracellular, plasma membrane	30.56	75.58
Solyc07g007680.2.1	Tomato	plastid	65.52	74.38
VIT_11s0118g00230.t01	Wine grape	endoplasmic reticulum, extracellular	65.67	73.9
Solyc12g009790.1.1	Tomato	endoplasmic reticulum	65.05	73.45
KRH03623	Soybean	endoplasmic reticulum	67.87	72.9
PGSC0003DMT400078832	Potato	cytosol	30.25	72.83
GSMUA_Achr1P26040_001	Banana	endoplasmic reticulum, golgi	62.23	71.02
Bra023307.1-P	Field mustard	endoplasmic reticulum	61.76	70.11
TraesCS2B01G545700.3	Wheat	endoplasmic reticulum, extracellular, plastid	62.07	69.47
GSMUA_Achr7P05380_001	Banana	endoplasmic reticulum	63.17	69.13
Zm00001d002090_P001	Maize	endoplasmic reticulum, extracellular, plastid	62.38	69.1
HORVU2Hr1G114590.1	Barley	endoplasmic reticulum, extracellular, plastid	61.6	68.95
TraesCS2A01G517200.1	Wheat	endoplasmic reticulum, extracellular, plastid	61.6	68.95
TraesCS2D01G518800.1	Wheat	endoplasmic reticulum, extracellular, plastid	61.6	68.95
EES11541	Sorghum	extracellular, golgi	61.91	68.58
GSMUA_Achr3P19840_001	Banana	endoplasmic reticulum, golgi, plastid	61.29	65.49
PGSC0003DMT400041534	Potato	cytosol	14.73	64.83
Solyc12g009700.1.1	Tomato	extracellular, plasma membrane	27.9	58.17
Solyc12g009760.1.1	Tomato	extracellular	11.13	57.26
Bra014457.1-P	Field mustard	endoplasmic reticulum, extracellular	29.47	37.23
Bra003434.1-P	Field mustard	endoplasmic reticulum, extracellular	29.15	36.83
Bra009476.1-P	Field mustard	endoplasmic reticulum, extracellular	26.96	31.62
Bra031157.1-P	Field mustard	endoplasmic reticulum, extracellular	26.65	31.42
Bra012209.1-P	Field mustard	cytosol	18.65	30.83
Bra016478.1-P	Field mustard	endoplasmic reticulum, extracellular	23.98	30.06

Protein Annotations

Gene3D:2.60.40.150	MapMan:35.1	EnsemblPlantsGene:Bra030612	EnsemblPlants:Bra030612.1	EnsemblPlants:Bra030612.1-P	InterPro:C2_dom
InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0006810	GO:GO:0006869
GO:GO:0008150	GO:GO:0008289	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000008	InterPro:IPR031468
InterPro:IPR035892	UniProt:M4EP92	PFAM:PF00168	PFAM:PF17047	PRINTS:PR00360	PFscan:PS50004
PFscan:PS51847	PANTHER:PTHR10774	PANTHER:PTHR10774:SF166	SMART:SM00239	InterPro:SMP_LBD	SUPFAM:SSF49562
InterPro:Synaptotagmin_SMP	TMHMM:TMhelix	UniParc:UPI00025454EE	SEG:seg	:	:

Description

AT1G05500 (E=1e-228) SYTE, ATSYTE, NTMC2TYPE2.1, NTMC2T2.1 | NTMC2T2.1

Coordinates

chrA08:-:21080230..21083933

Molecular Weight (calculated)

72073.1 Da

IEP (calculated)

6.690

GRAVY (calculated)

0.059

Length

638 amino acids

Sequence
(BLAST)

001: MGFVVGLVIG LAVGITFIIG FVKAENYRSK LRAELANTVA AFARMTVEDS RKLLPAEFYP SWVVFSERQK LSLLRKILPL LTKILPLFRK ILPLLRKILP
101: FLTNLVITLH AADTSLIWRF VYFQLTWLNH HLTKIWPYVD EAASELIRAS VEPVLEQYRP AVVASLTFSK LTLGTVAPQF TVRLHFVTYF SVIVTELMSK
201: GKFICVSIVE GDENGMTMEL DMNWDGNPNI VLGIKTLVGV SLPVQVKNIG FTGVFRLIFR PLVDEFPCFG AVSVSLREKK KLDFTLKVVG GDISAIPGLS
301: DAIEETIRDA VEDSITWPVR KVIPILPGDY SDLELKPVGM LEVKLVLAKN LTNKDLVGKS DPFAKMFIRP LREKTQRSKT INNDLNPIWN EHFEFVVEDA
401: STQHLVVRIY DDEGVQASEL IGCAQIRLCE LEPGKVKDVW LKLVKDLEIQ RDNKNRGEVH LELLYVPFDG GSNGIVNPLA SSSMTSLERV LKNDTTDEEN
501: ASSRKRKDVI VRGVLSVTVI SAEEIPIQDM MGKADPYVVL SMKKSGAKSK TRVVNDSLNP VWNQTFDFVV EDGLHDMLVL EVWDHDTFGK DYIGRCILTL
601: TRVIMEEEYK DWFALDESKA GKLQLHLKWM PQSIYRDS

Best Arabidopsis Sequence Match ( AT1G05500.1 )
(BLAST)

001: MGFIVGVVIG LLVGIAIIIG FVKLENSRSK LRSELANTVA AFARMTVEDS RKLLPPEFYP SWVVFSERQK LTWLNHHLTK IWPYVDEAAS ELIKASVEPV
101: LEQYRPAIVA SLTFSKLTLG TVAPQFTGVS VIDGDKNGIT LELDMQWDGN PNIVLGVKTL VGVSLPIQVK NIGFTGVFRL IFRPLVEDFP CFGAVSVSLR
201: EKKKLDFTLK VVGGDISAIP GLSEAIEETI RDAVEDSITW PVRKVIPIIP GDYSDLELKP VGMLEVKLVQ AKNLTNKDLV GKSDPFAKMF IRPLREKTKR
301: SKTINNDLNP IWNEHFEFVV EDASTQHLVV RIYDDEGVQA SELIGCAQIR LCELEPGKVK DVWLKLVKDL EIQRDTKNRG EVHLELLYIP YGSGNGIVNP
401: FVTSSMTSLE RVLKNDTTDE ENASSRKRKD VIVRGVLSVT VISAEEIPIQ DLMGKADPYV VLSMKKSGAK SKTRVVNDSL NPVWNQTFDF VVEDGLHDML
501: VLEVWDHDTF GKDYIGRCIL TLTRVIMEEE YKDWYPLDES KTGKLQLHLK WMAQSIYRDS

Arabidopsis Description

SYT5Synaptotagmin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L706]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.