Factsheet for Solyc12g009700.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046490	Potato	cytosol	23.86	86.9
Solyc12g009760.1.1	Tomato	extracellular	23.86	58.87
Solyc08g021940.1.1	Tomato	extracellular, plasma membrane	50.33	54.04
Solyc12g009790.1.1	Tomato	endoplasmic reticulum	82.68	44.78
Solyc07g007680.2.1	Tomato	plastid	70.26	38.26
VIT_11s0118g00230.t01	Wine grape	endoplasmic reticulum, extracellular	63.73	34.39
KRH03623	Soybean	endoplasmic reticulum	64.71	33.33
Bra015431.1-P	Field mustard	endoplasmic reticulum, extracellular	59.48	32.56
CDY47278	Canola	endoplasmic reticulum, extracellular	59.48	32.56
AT1G05500.1	Thale cress	endoplasmic reticulum, extracellular	58.5	31.96
CDY15543	Canola	endoplasmic reticulum, extracellular	59.48	31.93
CDY10116	Canola	endoplasmic reticulum, extracellular	59.15	31.48
CDX86575	Canola	endoplasmic reticulum, extracellular	59.15	31.37
GSMUA_Achr1P26040_001	Banana	endoplasmic reticulum, golgi	56.54	30.95
Zm00001d002090_P001	Maize	endoplasmic reticulum, extracellular, plastid	56.86	30.21
HORVU2Hr1G114590.1	Barley	endoplasmic reticulum, extracellular, plastid	54.9	29.47
TraesCS2A01G517200.1	Wheat	endoplasmic reticulum, extracellular, plastid	54.9	29.47
TraesCS2D01G518800.1	Wheat	endoplasmic reticulum, extracellular, plastid	54.9	29.47
TraesCS2B01G545700.3	Wheat	endoplasmic reticulum, extracellular, plastid	54.58	29.3
EES11541	Sorghum	extracellular, golgi	54.9	29.17
GSMUA_Achr7P05380_001	Banana	endoplasmic reticulum	55.56	29.16
GSMUA_Achr3P19840_001	Banana	endoplasmic reticulum, golgi, plastid	54.58	27.97
Bra030612.1-P	Field mustard	endoplasmic reticulum, extracellular	58.17	27.9
Solyc01g094030.2.1	Tomato	plastid	27.78	16.83
Solyc05g047710.2.1	Tomato	endoplasmic reticulum, mitochondrion	27.12	16.77
Solyc10g017590.2.1	Tomato	mitochondrion	25.82	16.63
Solyc12g089330.1.1	Tomato	endoplasmic reticulum, extracellular	23.53	13.71
Solyc09g007860.2.1	Tomato	endoplasmic reticulum	24.18	13.58
Solyc01g111520.2.1	Tomato	nucleus	22.55	12.8
Solyc10g052520.1.1	Tomato	endoplasmic reticulum, extracellular	9.15	10.89

Protein Annotations

EnsemblPlants:Solyc12g009700.1.1	EnsemblPlantsGene:Solyc12g009700.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0006810
GO:GO:0006869	GO:GO:0008150	GO:GO:0008289	GO:GO:0016020	GO:GO:0016021	InterPro:IPR031468
InterPro:SMP_LBD	InterPro:Synaptotagmin_SMP	PANTHER:PTHR10774	PANTHER:PTHR10774:SF166	PFAM:PF17047	PFscan:PS51847
SEG:seg	TMHMM:TMhelix	UniParc:UPI0002769B2A	UniProt:K4DC58	MapMan:35.1	:

Description

No Description!

Coordinates

chr12:+:2943402..2948669

Molecular Weight (calculated)

34154.6 Da

IEP (calculated)

5.019

GRAVY (calculated)

0.243

Length

306 amino acids

Sequence
(BLAST)

001: MSFVLGVVFG IAFGLAIIVA FVKSGNARSK QRTDLASGIA AFARMTVEDS RKIFTPEEYP TWVVFSNQQK LAWFNSNLEK IWPYMDEAAA ELVKSSVEPI
101: LEQYRPVILT SLKFSEFTLG TVAPRFTGIS IIEDGSEGIT MELEIKWDGN TSIILDIVTC VGVALPVQVK NIAFAGTFRL IFRPLVDEFP CFGAVCYSLR
201: QKKKLDFTLK VIGGDMTAIP GVSDAIEVHL EYCPNGMNNG LSYPFSQNDS MTSLERVLKN STEGKEVSPN GSEINNRKLL FLYLQFSVCC LYMFDRNIII
301: CVFIYL

Best Arabidopsis Sequence Match ( AT1G05500.1 )
(BLAST)

001: MGFIVGVVIG LLVGIAIIIG FVKLENSRSK LRSELANTVA AFARMTVEDS RKLLPPEFYP SWVVFSERQK LTWLNHHLTK IWPYVDEAAS ELIKASVEPV
101: LEQYRPAIVA SLTFSKLTLG TVAPQFTGVS VIDGDKNGIT LELDMQWDGN PNIVLGVKTL VGVSLPIQVK NIGFTGVFRL IFRPLVEDFP CFGAVSVSLR
201: EKKKLDFTLK VVGGDISAIP GLSEAIEETI RDAVEDSITW PVRKVIPIIP GDYSDLELKP VGMLEVKLVQ AKNLTNKDLV GKSDPFAKMF IRPLREKTKR
301: SKTINNDLNP IWNEHFEFVV EDASTQHLVV RIYDDEGVQA SELIGCAQIR LCELEPGKVK DVWLKLVKDL EIQRDTKNRG EVHLELLYIP YGSGNGIVNP
401: FVTSSMTSLE RVLKNDTTDE ENASSRKRKD VIVRGVLSVT VISAEEIPIQ DLMGKADPYV VLSMKKSGAK SKTRVVNDSL NPVWNQTFDF VVEDGLHDML
501: VLEVWDHDTF GKDYIGRCIL TLTRVIMEEE YKDWYPLDES KTGKLQLHLK WMAQSIYRDS

Arabidopsis Description

SYT5Synaptotagmin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L706]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.