Factsheet for Solyc12g009760.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068835	Potato	extracellular	41.94	74.29
PGSC0003DMT400054286	Potato	extracellular	41.94	74.29
PGSC0003DMT400041534	Potato	cytosol	30.65	26.21
Solyc12g009700.1.1	Tomato	extracellular, plasma membrane	58.87	23.86
Solyc08g021940.1.1	Tomato	extracellular, plasma membrane	54.03	23.51
Solyc12g009790.1.1	Tomato	endoplasmic reticulum	68.55	15.04
Solyc07g007680.2.1	Tomato	plastid	66.94	14.77
VIT_11s0118g00230.t01	Wine grape	endoplasmic reticulum, extracellular	62.9	13.76
KRH03623	Soybean	endoplasmic reticulum	64.52	13.47
Solyc10g052520.1.1	Tomato	endoplasmic reticulum, extracellular	27.42	13.23
GSMUA_Achr1P26040_001	Banana	endoplasmic reticulum, golgi	58.87	13.06
Bra015431.1-P	Field mustard	endoplasmic reticulum, extracellular	58.06	12.88
CDY47278	Canola	endoplasmic reticulum, extracellular	58.06	12.88
GSMUA_Achr7P05380_001	Banana	endoplasmic reticulum	60.48	12.86
CDY10116	Canola	endoplasmic reticulum, extracellular	58.06	12.52
AT1G05500.1	Thale cress	endoplasmic reticulum, extracellular	56.45	12.5
CDY15543	Canola	endoplasmic reticulum, extracellular	57.26	12.46
CDX86575	Canola	endoplasmic reticulum, extracellular	57.26	12.3
HORVU2Hr1G114590.1	Barley	endoplasmic reticulum, extracellular, plastid	56.45	12.28
TraesCS2A01G517200.1	Wheat	endoplasmic reticulum, extracellular, plastid	56.45	12.28
TraesCS2D01G518800.1	Wheat	endoplasmic reticulum, extracellular, plastid	55.65	12.11
TraesCS2B01G545700.3	Wheat	endoplasmic reticulum, extracellular, plastid	55.65	12.11
Zm00001d002090_P001	Maize	endoplasmic reticulum, extracellular, plastid	54.84	11.81
EES11541	Sorghum	extracellular, golgi	54.03	11.63
GSMUA_Achr3P19840_001	Banana	endoplasmic reticulum, golgi, plastid	54.03	11.22
Bra030612.1-P	Field mustard	endoplasmic reticulum, extracellular	57.26	11.13
Solyc05g047710.2.1	Tomato	endoplasmic reticulum, mitochondrion	34.68	8.69
Solyc10g017590.2.1	Tomato	mitochondrion	33.06	8.63
Solyc01g094030.2.1	Tomato	plastid	34.68	8.51
Solyc01g111520.2.1	Tomato	nucleus	29.84	6.86
Solyc12g089330.1.1	Tomato	endoplasmic reticulum, extracellular	29.03	6.86
Solyc09g007860.2.1	Tomato	endoplasmic reticulum	28.23	6.42

Protein Annotations

EnsemblPlants:Solyc12g009760.1.1	EnsemblPlantsGene:Solyc12g009760.1	PANTHER:PTHR10774	PANTHER:PTHR10774:SF167	SEG:seg	TMHMM:TMhelix
UniParc:UPI0002769B2F	UniProt:K4DC64	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr12:+:2977591..2979190

Molecular Weight (calculated)

13876.2 Da

IEP (calculated)

6.488

GRAVY (calculated)

0.453

Length

124 amino acids

Sequence
(BLAST)

001: MQWDGNTSII LDVMTCLGVA LPVEVKNIAF AGTFRLIFRR LVDEFPCFGA VYYSLRQKKK LDYTLKVFGG DMTAIPGVSD AIEGTIRMLL KTQSCGQFEK
101: LFAFYQGIIG IDIDNGFIVY TIVL

Best Arabidopsis Sequence Match ( AT1G05500.2 )
(BLAST)

001: MQWDGNPNIV LGVKTLVGVS LPIQVKNIGF TGVFRLIFRP LVEDFPCFGA VSVSLREKKK LDFTLKVVGG DISAIPGLSE AIEETIRDAV EDSITWPVRK
101: VIPIIPGDYS DLELKPVGML EVKLVQAKNL TNKDLVGKSD PFAKMFIRPL REKTKRSKTI NNDLNPIWNE HFEFVVEDAS TQHLVVRIYD DEGVQASELI
201: GCAQIRLCEL EPGKVKDVWL KLVKDLEIQR DTKNRGEVHL ELLYIPYGSG NGIVNPFVTS SMTSLERVLK NDTTDEENAS SRKRKDVIVR GVLSVTVISA
301: EEIPIQDLMG KADPYVVLSM KKSGAKSKTR VVNDSLNPVW NQTFDFVVED GLHDMLVLEV WDHDTFGKDY IGRCILTLTR VIMEEEYKDW YPLDESKTGK
401: LQLHLKWMAQ SIYRDS

Arabidopsis Description

SYT5Synaptotagmin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L706]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.