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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:
  • nucleus 1
  • mitochondrion 1
  • extracellular 3
  • cytosol 2
  • endoplasmic reticulum 3
  • vacuole 2
  • plasma membrane 2
  • golgi 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular
Any Predictor:cytosol, mitochondrion, nucleus, secretory
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:extracellular
Plant-mPloc:cytosol
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:endoplasmic reticulum
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc01g094030.2.1 Tomato plastid 83.66 42.57
KRH55269 Soybean cytosol, plasma membrane 41.63 40.84
Solyc05g047710.2.1 Tomato endoplasmic reticulum, mitochondrion 71.6 37.17
Solyc10g017590.2.1 Tomato mitochondrion 68.09 36.84
HORVU2Hr1G052430.2 Barley cytosol 50.58 36.83
VIT_15s0048g01410.t01 Wine grape endoplasmic reticulum, extracellular 71.6 35.87
CDY45675 Canola endoplasmic reticulum, extracellular 67.7 34.46
Bra003434.1-P Field mustard endoplasmic reticulum, extracellular 67.7 34.46
Bra014457.1-P Field mustard endoplasmic reticulum, extracellular 67.32 34.26
AT3G61050.2 Thale cress endoplasmic reticulum, extracellular, plasma membrane 67.32 33.92
GSMUA_Achr2P12230_001 Banana endoplasmic reticulum, mitochondrion 65.76 33.87
KRH48321 Soybean endoplasmic reticulum, mitochondrion 67.32 33.02
CDX67848 Canola endoplasmic reticulum, extracellular, plasma membrane 60.31 32.7
CDX89094 Canola endoplasmic reticulum, extracellular, plasma membrane 59.92 32.49
KRH65210 Soybean endoplasmic reticulum, mitochondrion 67.32 32.34
CDY42483 Canola endoplasmic reticulum, extracellular 59.53 32.28
TraesCS2A01G244800.1 Wheat plasma membrane 62.26 31.5
TraesCS2D01G242600.1 Wheat plasma membrane 62.26 31.5
TraesCS2B01G262400.1 Wheat plasma membrane 62.26 31.5
EER96263 Sorghum mitochondrion, plasma membrane 61.09 30.91
KRH40562 Soybean endoplasmic reticulum 64.2 30.84
KRH00619 Soybean mitochondrion, plasma membrane 65.37 30.83
Os07t0409100-01 Rice plasma membrane 60.31 30.1
GSMUA_Achr5P04070_001 Banana endoplasmic reticulum, mitochondrion 61.87 29.61
EER93061 Sorghum endoplasmic reticulum, mitochondrion 57.98 29.56
Zm00001d028437_P001 Maize endoplasmic reticulum, extracellular, plasma membrane 58.75 29.09
Os03t0251600-00 Rice plasma membrane 58.37 28.41
EER92549 Sorghum endoplasmic reticulum, extracellular 56.42 28.38
Zm00001d019472_P005 Maize endoplasmic reticulum, mitochondrion, plasma membrane 58.75 28.22
TraesCS4B01G222600.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 55.64 28.09
TraesCS4A01G081200.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 55.25 27.57
TraesCS4D01G223100.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 55.25 27.57
Solyc12g009760.1.1 Tomato extracellular 13.23 27.42
HORVU4Hr1G062820.2 Barley endoplasmic reticulum, extracellular, plasma membrane 53.31 26.76
AT3G61030.1 Thale cress mitochondrion 48.25 24.36
AT3G60950.1 Thale cress mitochondrion 47.08 19.3
Solyc12g009790.1.1 Tomato endoplasmic reticulum 35.8 16.28
Solyc07g007680.2.1 Tomato plastid 33.46 15.3
Solyc12g089330.1.1 Tomato endoplasmic reticulum, extracellular 26.46 12.95
Solyc01g111520.2.1 Tomato nucleus 26.46 12.62
Solyc09g007860.2.1 Tomato endoplasmic reticulum 24.9 11.74
Solyc08g021940.1.1 Tomato extracellular, plasma membrane 12.45 11.23
Solyc12g009700.1.1 Tomato extracellular, plasma membrane 10.89 9.15
Protein Annotations
Gene3D:2.60.40.150MapMan:35.1InterPro:C2_domInterPro:C2_domain_sfInterPro:CLB_plantGO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0006139GO:GO:0006355
GO:GO:0006950GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987InterPro:IPR000008
InterPro:IPR035892UniProt:K4D0V4PFAM:PF00168PFscan:PS50004PANTHER:PTHR10774PANTHER:PTHR10774:SF51
SMART:SM00239SUPFAM:SSF49562EnsemblPlantsGene:Solyc10g052520.1EnsemblPlants:Solyc10g052520.1.1UniParc:UPI000276A6F2SEG:seg
Description
No Description!
Coordinates
chr10:+:52910063..52911065
Molecular Weight (calculated)
28359.0 Da
IEP (calculated)
9.818
GRAVY (calculated)
0.094
Length
257 amino acids
Sequence
(BLAST)
001: MVASIPIQLK NLQVFTVIRV IFQLTEEIPC ISAVVVALLS EPKPRIDYVL KAFGGSLTTI PGLLDMIEDT VNTIVTDIDL ELKPQGKLTV TIVKVNGLKN
101: HKMIGKSDPY VVIQIRSLFK VKTKTIDNNL NHVWDQTFEL IAEEKETQYL FIEVFHKDNI RQDQRMGVAM LTLNELVADA AKEIELILLP KHDMCRYGGS
201: GIGAGVRLIG TGLGSGIGVV GSCFRAVGSG LRKAGRFIGR TFTRSSKKNG SSTRERF
Best Arabidopsis Sequence Match ( AT3G61050.1 )
(BLAST)
001: MGLISGILFG IIFGVALMAG WSRMMTHRSS KRVAKAVDMK LLGSLSRDDL KKICGDNFPQ WISFPAFEQV KWLNKLLSKM WPYIAEAATM VIRDSVEPLL
101: EDYRPPGITS LKFSKLTLGN VAPKIEGIRV QSFKEGQVTM DVDLRWGGDP NIVLGVTALV ASIPIQLKDL QVFTVARVIF QLADEIPCIS AVVVALLAEP
201: KPRIDYTLKA VGGSLTAIPG LSDMIDDTVD TIVKDMLQWP HRIVVPIGGI PVDLSDLELK PQGKLIVTVV KATNLKNKEL IGKSDPYATI YIRPVFKYKT
301: KAIENNLNPV WDQTFELIAE DKETQSLTVE VFDKDVGQDE RLGLVKLPLS SLEAGVTKEL ELNLLSSLDT LKVKDKKDRG SITLKVHYHE FNKEEQMAAL
401: EDEKKIMEER KRLKEAGVIG STMDAVGMVG SGLGAGVGMV GTGIGTGVGL VGSGVSSGVG MVGSGFGAVG SGLSKAGRFM GRTITGQSSK RSGSSTPVNT
501: VPENDGAKQQ
Arabidopsis Description
NTMC2TYPE4At3g61050 [Source:UniProtKB/TrEMBL;Acc:Q9LEX1]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.